Analysis of interatomic Contacts of Structural Units in PDB entry:
10NB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10NB entry

There are 6 chains in PDB entry 10NB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	LYS 350
B	GLY 0	LYS 350
C	GLY 0	LYS 350
D	GLY 1	LYS 350
E	GLY 0	LYS 350
F	GLY 0	LYS 350

There are 90 helices in PDB entry 10NB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	12	Right-handed 310
Helix 3	AA3	A	42	54	Right-handed alpha
Helix 4	AA4	A	55	66	Right-handed alpha
Helix 5	AA5	A	103	108	Right-handed alpha
Helix 6	AA6	A	112	119	Right-handed alpha
Helix 7	AA7	A	133	148	Right-handed alpha
Helix 8	AA8	A	184	194	Right-handed alpha
Helix 9	AA9	A	204	208	Right-handed 310
Helix 10	AB1	A	209	219	Right-handed alpha
Helix 11	AB2	A	233	242	Right-handed alpha
Helix 12	AB3	A	246	256	Right-handed alpha
Helix 13	AB4	A	285	293	Right-handed alpha
Helix 14	AB5	A	297	307	Right-handed alpha
Helix 15	AB6	A	314	325	Right-handed alpha
Helix 16	AB7	A	339	348	Right-handed alpha
Helix 17	AB8	B	1	14	Right-handed alpha
Helix 18	AB9	B	42	54	Right-handed alpha
Helix 19	AC1	B	55	66	Right-handed alpha
Helix 20	AC2	B	103	108	Right-handed alpha
Helix 21	AC3	B	111	118	Right-handed alpha
Helix 22	AC4	B	133	148	Right-handed alpha
Helix 23	AC5	B	182	194	Right-handed alpha
Helix 24	AC6	B	205	219	Right-handed alpha
Helix 25	AC7	B	230	241	Right-handed alpha
Helix 26	AC8	B	243	257	Right-handed alpha
Helix 27	AC9	B	285	295	Right-handed alpha
Helix 28	AD1	B	296	307	Right-handed alpha
Helix 29	AD2	B	314	325	Right-handed alpha
Helix 30	AD3	B	329	337	Right-handed alpha
Helix 31	AD4	B	340	350	Right-handed alpha
Helix 32	AD5	C	2	13	Right-handed alpha
Helix 33	AD6	C	42	52	Right-handed alpha
Helix 34	AD7	C	55	66	Right-handed alpha
Helix 35	AD8	C	111	118	Right-handed alpha
Helix 36	AD9	C	133	149	Right-handed alpha
Helix 37	AE1	C	182	192	Right-handed alpha
Helix 38	AE2	C	205	218	Right-handed alpha
Helix 39	AE3	C	230	241	Right-handed alpha
Helix 40	AE4	C	246	257	Right-handed alpha
Helix 41	AE5	C	285	295	Right-handed alpha
Helix 42	AE6	C	296	308	Right-handed alpha
Helix 43	AE7	C	314	325	Right-handed alpha
Helix 44	AE8	C	329	335	Right-handed alpha
Helix 45	AE9	C	338	350	Right-handed alpha
Helix 46	AF1	D	2	9	Right-handed alpha
Helix 47	AF2	D	10	12	Right-handed 310
Helix 48	AF3	D	42	54	Right-handed alpha
Helix 49	AF4	D	55	65	Right-handed alpha
Helix 50	AF5	D	103	108	Right-handed alpha
Helix 51	AF6	D	112	117	Right-handed alpha
Helix 52	AF7	D	133	148	Right-handed alpha
Helix 53	AF8	D	184	193	Right-handed alpha
Helix 54	AF9	D	209	219	Right-handed alpha
Helix 55	AG1	D	233	242	Right-handed alpha
Helix 56	AG2	D	246	256	Right-handed alpha
Helix 57	AG3	D	285	293	Right-handed alpha
Helix 58	AG4	D	297	307	Right-handed alpha
Helix 59	AG5	D	314	325	Right-handed alpha
Helix 60	AG6	D	339	348	Right-handed alpha
Helix 61	AG7	E	1	14	Right-handed alpha
Helix 62	AG8	E	42	54	Right-handed alpha
Helix 63	AG9	E	55	66	Right-handed alpha
Helix 64	AH1	E	103	108	Right-handed alpha
Helix 65	AH2	E	111	118	Right-handed alpha
Helix 66	AH3	E	133	148	Right-handed alpha
Helix 67	AH4	E	182	194	Right-handed alpha
Helix 68	AH5	E	205	219	Right-handed alpha
Helix 69	AH6	E	230	241	Right-handed alpha
Helix 70	AH7	E	243	257	Right-handed alpha
Helix 71	AH8	E	285	295	Right-handed alpha
Helix 72	AH9	E	296	307	Right-handed alpha
Helix 73	AI1	E	314	325	Right-handed alpha
Helix 74	AI2	E	329	337	Right-handed alpha
Helix 75	AI3	E	340	350	Right-handed alpha
Helix 76	AI4	F	2	13	Right-handed alpha
Helix 77	AI5	F	42	52	Right-handed alpha
Helix 78	AI6	F	55	66	Right-handed alpha
Helix 79	AI7	F	111	118	Right-handed alpha
Helix 80	AI8	F	133	149	Right-handed alpha
Helix 81	AI9	F	182	192	Right-handed alpha
Helix 82	AJ1	F	205	218	Right-handed alpha
Helix 83	AJ2	F	230	241	Right-handed alpha
Helix 84	AJ3	F	246	257	Right-handed alpha
Helix 85	AJ4	F	285	295	Right-handed alpha
Helix 86	AJ5	F	296	304	Right-handed alpha
Helix 87	AJ6	F	305	310	Right-handed 310
Helix 88	AJ7	F	314	325	Right-handed alpha
Helix 89	AJ8	F	329	335	Right-handed alpha
Helix 90	AJ9	F	338	350	Right-handed alpha

There are 18 sheets in PDB entry 10NB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	36	first strand
Strand 2	A	24	30	anti-parallel
Strand 3	A	17	21	anti-parallel
Strand 4	A	89	96	anti-parallel
Strand 5	A	79	86	anti-parallel
Strand 6	A	70	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	152	157	parallel
Strand 3	A	197	200	parallel
Strand 4	A	221	223	parallel
Strand 5	A	122	127	parallel
Strand 6	A	225	226	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	152	157	parallel
Strand 3	A	197	200	parallel
Strand 4	A	221	223	parallel
Strand 5	A	122	127	parallel
Strand 6	A	260	265	parallel
Strand 7	A	278	281	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	26	29	anti-parallel
Strand 3	B	17	21	anti-parallel
Strand 4	B	89	96	anti-parallel
Strand 5	B	79	86	anti-parallel
Strand 6	B	70	72	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	174	first strand
Strand 2	B	152	156	parallel
Strand 3	B	197	200	parallel
Strand 4	B	221	227	parallel
Strand 5	B	122	128	parallel
Strand 6	B	258	268	parallel
Strand 7	B	275	283	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	36	first strand
Strand 2	C	27	30	anti-parallel
Strand 3	C	17	21	anti-parallel
Strand 4	C	89	96	anti-parallel
Strand 5	C	77	86	anti-parallel
Strand 6	C	67	74	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	152	157	parallel
Strand 3	C	174	175	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	152	157	parallel
Strand 3	C	197	200	parallel
Strand 4	C	221	226	parallel
Strand 5	C	122	127	parallel
Strand 6	C	260	263	parallel
Strand 7	C	281	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	268	first strand
Strand 2	C	275	278	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	36	first strand
Strand 2	D	24	30	anti-parallel
Strand 3	D	17	21	anti-parallel
Strand 4	D	89	96	anti-parallel
Strand 5	D	79	86	anti-parallel
Strand 6	D	70	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	152	157	parallel
Strand 3	D	197	200	parallel
Strand 4	D	221	223	parallel
Strand 5	D	122	127	parallel
Strand 6	D	225	226	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	152	157	parallel
Strand 3	D	197	200	parallel
Strand 4	D	221	223	parallel
Strand 5	D	122	127	parallel
Strand 6	D	260	265	parallel
Strand 7	D	278	281	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	37	first strand
Strand 2	E	26	29	anti-parallel
Strand 3	E	17	21	anti-parallel
Strand 4	E	89	96	anti-parallel
Strand 5	E	79	86	anti-parallel
Strand 6	E	70	72	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	174	first strand
Strand 2	E	152	156	parallel
Strand 3	E	197	200	parallel
Strand 4	E	221	227	parallel
Strand 5	E	122	128	parallel
Strand 6	E	258	268	parallel
Strand 7	E	275	283	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	36	first strand
Strand 2	F	27	30	anti-parallel
Strand 3	F	17	21	anti-parallel
Strand 4	F	89	96	anti-parallel
Strand 5	F	77	86	anti-parallel
Strand 6	F	67	74	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	152	157	parallel
Strand 3	F	174	175	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	152	157	parallel
Strand 3	F	197	200	parallel
Strand 4	F	221	226	parallel
Strand 5	F	122	127	parallel
Strand 6	F	260	263	parallel
Strand 7	F	281	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	268	first strand
Strand 2	F	275	278	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10NB

Analysis of interatomic Contacts of Structural Units in PDB entry:
10NB