Analysis of interatomic Contacts of Structural Units in PDB entry:
10OJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10OJ entry

There are 2 chains in PDB entry 10OJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 13TYR 333
B
 SER 14TYR 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 10OJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 44Right-handed alpha
Helix 2
AA2
A
53 61Right-handed alpha
Helix 3
AA3
A
73 77Right-handed 310
Helix 4
AA4
A
87 91Right-handed 310
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
116 129Right-handed alpha
Helix 7
AA7
A
152 174Right-handed alpha
Helix 8
AA8
A
188 199Right-handed alpha
Helix 9
AA9
A
211 226Right-handed alpha
Helix 10
AB1
A
240 253Right-handed alpha
Helix 11
AB2
A
262 267Right-handed 310
Helix 12
AB3
A
271 291Right-handed alpha
Helix 13
AB4
A
310 315Right-handed alpha
Helix 14
AB5
A
322 332Right-handed alpha
Helix 15
AB6
B
29 44Right-handed alpha
Helix 16
AB7
B
54 60Right-handed alpha
Helix 17
AB8
B
87 91Right-handed 310
Helix 18
AB9
B
92 106Right-handed alpha
Helix 19
AC1
B
116 128Right-handed alpha
Helix 20
AC2
B
152 175Right-handed alpha
Helix 21
AC3
B
188 199Right-handed alpha
Helix 22
AC4
B
211 226Right-handed alpha
Helix 23
AC5
B
240 253Right-handed alpha
Helix 24
AC6
B
262 267Right-handed 310
Helix 25
AC7
B
271 291Right-handed alpha
Helix 26
AC8
B
310 316Right-handed alpha
Helix 27
AC9
B
322 332Right-handed alpha
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There are 4 sheets in PDB entry 10OJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
17 23parallel
Strand 4
A
110 115parallel
Strand 5
A
133 137parallel
Strand 6
A
296 300parallel
Strand 7
A
305 309anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
230 235parallel
Strand 3
A
177 182parallel
Strand 4
A
256 260parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
47 51anti-parallel
Strand 3
B
17 23parallel
Strand 4
B
110 115parallel
Strand 5
B
133 137parallel
Strand 6
B
296 301parallel
Strand 7
B
304 309anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
230 235parallel
Strand 3
B
177 182parallel
Strand 4
B
256 260parallel
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