Analysis of interatomic Contacts of Structural Units in PDB entry:
10PA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10PA entry

There is 1 chain in PDB entry 10PA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 243ASN 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 10PA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
247 249Right-handed 310
Helix 2
AA2
A
307 314Right-handed 310
Helix 3
AA3
A
333 335Right-handed 310
Helix 4
AA4
A
344 349Right-handed alpha
Helix 5
AA5
A
364 367Right-handed 310
Helix 6
AA6
A
483 487Right-handed 310
Helix 7
AA7
A
491 495Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 10PA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 260first strand
Strand 2
A
274 283anti-parallel
Strand 3
A
352 362anti-parallel
Strand 4
A
301 302anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
325 332anti-parallel
Strand 3
A
337 342anti-parallel
Strand 4
A
292 297anti-parallel
Strand 5
A
371 380anti-parallel
Strand 6
A
383 391anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 399first strand
Strand 2
A
402 413anti-parallel
Strand 3
A
422 430anti-parallel
Strand 4
A
517 524anti-parallel
Strand 5
A
464 469anti-parallel
Strand 6
A
488 489anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
505 513anti-parallel
Strand 3
A
437 445anti-parallel
Strand 4
A
534 543anti-parallel
Strand 5
A
546 556anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il