Analysis of interatomic Contacts of Structural Units in PDB entry:
10QI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10QI entry

There is 1 chain in PDB entry 10QI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 46GLU 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 10QI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 76Right-handed 310
Helix 2
AA2
A
257 264Right-handed alpha
Helix 3
AA3
A
439 444Right-handed alpha
Helix 4
AA4
A
445 450Right-handed alpha
Helix 5
AA5
A
495 500Right-handed alpha
Helix 6
AA6
A
527 532Right-handed alpha
Helix 7
AA7
A
533 535Right-handed 310
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There are 8 sheets in PDB entry 10QI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
110 118parallel
Strand 4
A
84 90anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
488 494anti-parallel
Strand 3
A
474 480anti-parallel
Strand 4
A
453 468anti-parallel
Strand 5
A
424 433anti-parallel
Strand 6
A
409 418anti-parallel
Strand 7
A
396 403anti-parallel
Strand 8
A
504 505anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 146first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
172 179anti-parallel
Strand 4
A
190 191anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
238 244anti-parallel
Strand 3
A
217 224anti-parallel
Strand 4
A
202 210anti-parallel
Strand 5
A
276 277parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
292 299anti-parallel
Strand 3
A
279 280anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
292 299anti-parallel
Strand 3
A
308 315anti-parallel
Strand 4
A
323 324anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 343first strand
Strand 2
A
349 354anti-parallel
Strand 3
A
361 370anti-parallel
Strand 4
A
375 378anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 343first strand
Strand 2
A
349 354anti-parallel
Strand 3
A
361 370anti-parallel
Strand 4
A
382 384anti-parallel
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