Analysis of interatomic Contacts of Structural Units in PDB entry:
10QX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10QX entry

There are 2 chains in PDB entry 10QX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 91LEU 983
B
 PRO 89LEU 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 10QX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 105Right-handed alpha
Helix 2
AA2
A
118 130Right-handed alpha
Helix 3
AA3
A
150 163Right-handed alpha
Helix 4
AA4
A
164 166Right-handed 310
Helix 5
AA5
A
199 210Right-handed alpha
Helix 6
AA6
A
216 226Right-handed alpha
Helix 7
AA7
A
241 245Right-handed 310
Helix 8
AA8
A
249 262Right-handed alpha
Helix 9
AA9
A
282 292Right-handed alpha
Helix 10
AB1
A
303 314Right-handed alpha
Helix 11
AB2
A
332 353Right-handed alpha
Helix 12
AB3
A
363 368Right-handed alpha
Helix 13
AB4
A
370 381Right-handed alpha
Helix 14
AB5
A
382 386Right-handed 310
Helix 15
AB6
A
388 409Right-handed alpha
Helix 16
AB7
A
412 426Right-handed alpha
Helix 17
AB8
A
443 445Right-handed 310
Helix 18
AB9
A
446 456Right-handed alpha
Helix 19
AC1
A
468 482Right-handed alpha
Helix 20
AC2
A
500 514Right-handed alpha
Helix 21
AC3
A
518 525Right-handed alpha
Helix 22
AC4
A
525 534Right-handed alpha
Helix 23
AC5
A
700 706Right-handed alpha
Helix 24
AC6
A
720 732Right-handed alpha
Helix 25
AC7
A
748 775Right-handed alpha
Helix 26
AC8
A
787 798Right-handed alpha
Helix 27
AC9
A
832 840Right-handed alpha
Helix 28
AD1
A
867 876Right-handed alpha
Helix 29
AD2
A
877 888Right-handed alpha
Helix 30
AD3
A
907 912Right-handed 310
Helix 31
AD4
A
931 947Right-handed alpha
Helix 32
AD5
A
957 969Right-handed alpha
Helix 33
AD6
A
976 983Right-handed alpha
Helix 34
AD7
B
102 108Right-handed 310
Helix 35
AD8
B
140 145Right-handed alpha
Helix 36
AD9
B
146 158Right-handed alpha
Helix 37
AE1
B
177 189Right-handed alpha
Helix 38
AE2
B
197 209Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 10QX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
211 215parallel
Strand 3
A
143 147parallel
Strand 4
A
236 239parallel
Strand 5
A
266 270parallel
Strand 6
A
108 111parallel
Strand 7
A
295 298parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
138 141anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
738 744parallel
Strand 3
A
711 714parallel
Strand 4
A
494 498parallel
Strand 5
A
690 694parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 847first strand
Strand 2
A
821 825parallel
Strand 3
A
854 857anti-parallel
Strand 4
A
860 866anti-parallel
Strand 5
A
892 898parallel
Strand 6
A
951 955parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
92 95parallel
Strand 3
B
128 130anti-parallel
Strand 4
B
133 139anti-parallel
Strand 5
B
163 168parallel
Strand 6
B
190 195parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il