Analysis of interatomic Contacts of Structural Units in PDB entry:
10QY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10QY entry

There are 3 chains in PDB entry 10QY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 81LEU 983
B
 PRO 89LEU 210
C
 MET 1ARG 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 10QY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 103Right-handed alpha
Helix 2
AA2
A
120 130Right-handed alpha
Helix 3
AA3
A
150 165Right-handed alpha
Helix 4
AA4
A
199 210Right-handed alpha
Helix 5
AA5
A
216 226Right-handed alpha
Helix 6
AA6
A
249 259Right-handed alpha
Helix 7
AA7
A
275 280Right-handed alpha
Helix 8
AA8
A
283 291Right-handed alpha
Helix 9
AA9
A
303 311Right-handed alpha
Helix 10
AB1
A
329 354Right-handed alpha
Helix 11
AB2
A
370 381Right-handed alpha
Helix 12
AB3
A
382 384Right-handed 310
Helix 13
AB4
A
388 411Right-handed alpha
Helix 14
AB5
A
412 428Right-handed alpha
Helix 15
AB6
A
438 445Right-handed 310
Helix 16
AB7
A
446 454Right-handed alpha
Helix 17
AB8
A
455 457Right-handed 310
Helix 18
AB9
A
468 485Right-handed alpha
Helix 19
AC1
A
500 515Right-handed alpha
Helix 20
AC2
A
518 539Right-handed alpha
Helix 21
AC3
A
602 611Right-handed alpha
Helix 22
AC4
A
625 635Right-handed alpha
Helix 23
AC5
A
670 680Right-handed alpha
Helix 24
AC6
A
685 687Right-handed 310
Helix 25
AC7
A
696 700Right-handed 310
Helix 26
AC8
A
702 708Right-handed alpha
Helix 27
AC9
A
718 732Right-handed alpha
Helix 28
AD1
A
749 753Right-handed 310
Helix 29
AD2
A
754 775Right-handed alpha
Helix 30
AD3
A
787 796Right-handed alpha
Helix 31
AD4
A
827 831Right-handed 310
Helix 32
AD5
A
832 840Right-handed alpha
Helix 33
AD6
A
867 876Right-handed alpha
Helix 34
AD7
A
878 888Right-handed alpha
Helix 35
AD8
A
907 912Right-handed 310
Helix 36
AD9
A
930 947Right-handed alpha
Helix 37
AE1
A
957 969Right-handed alpha
Helix 38
AE2
A
976 983Right-handed alpha
Helix 39
AE3
B
98 102Right-handed 310
Helix 40
AE4
B
103 108Right-handed alpha
Helix 41
AE5
B
140 144Right-handed alpha
Helix 42
AE6
B
148 155Right-handed alpha
Helix 43
AE7
B
174 189Right-handed alpha
Helix 44
AE8
B
197 208Right-handed alpha
Helix 45
AE9
C
48 50Right-handed 310
Helix 46
AF1
C
66 77Right-handed alpha
Helix 47
AF2
C
77 87Right-handed alpha
Helix 48
AF3
C
90 97Right-handed alpha
Helix 49
AF4
C
98 101Right-handed 310
Helix 50
AF5
C
109 113Right-handed alpha
Helix 51
AF6
C
114 117Right-handed 310
Helix 52
AF7
C
158 170Right-handed alpha
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There are 7 sheets in PDB entry 10QY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
C
52 57parallel
Strand 3
C
41 43anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
C
52 57parallel
Strand 3
C
46 47anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
268 271parallel
Strand 3
A
108 112parallel
Strand 4
A
295 299parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
738 744parallel
Strand 3
A
711 714parallel
Strand 4
A
494 498parallel
Strand 5
A
689 694parallel
Strand 6
C
186 192anti-parallel
Strand 7
C
226 233anti-parallel
Strand 8
C
14 21parallel
Strand 9
C
4 9anti-parallel
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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
738 744parallel
Strand 3
A
711 714parallel
Strand 4
A
494 498parallel
Strand 5
A
689 694parallel
Strand 6
C
186 192anti-parallel
Strand 7
C
226 233anti-parallel
Strand 8
C
14 21parallel
Strand 9
C
238 244parallel
Strand 10
C
151 156anti-parallel
Strand 11
C
142 147anti-parallel
Strand 12
C
131 136anti-parallel
Strand 13
C
106 108anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 847first strand
Strand 2
A
821 825parallel
Strand 3
A
854 857anti-parallel
Strand 4
A
860 866anti-parallel
Strand 5
A
892 898parallel
Strand 6
A
951 955parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
93 96parallel
Strand 3
B
128 130anti-parallel
Strand 4
B
133 139anti-parallel
Strand 5
B
163 168parallel
Strand 6
B
190 195parallel
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