Analysis of interatomic Contacts of Structural Units in PDB entry:
10RN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10RN entry

There are 4 chains in PDB entry 10RN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 41GLU 682
B
 PRO 114THR 664
D
 ILE 41GLU 682
E
 PRO 114THR 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 10RN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 59Right-handed alpha
Helix 2
AA2
A
64 77Right-handed alpha
Helix 3
AA3
A
88 104Right-handed alpha
Helix 4
AA4
A
108 128Right-handed alpha
Helix 5
AA5
A
151 159Right-handed alpha
Helix 6
AA6
A
165 184Right-handed alpha
Helix 7
AA7
A
622 633Right-handed alpha
Helix 8
AA8
A
646 650Right-handed 310
Helix 9
AA9
B
188 201Right-handed alpha
Helix 10
AB1
B
207 214Right-handed alpha
Helix 11
AB2
B
229 238Right-handed alpha
Helix 12
AB3
B
255 265Right-handed alpha
Helix 13
AB4
B
280 289Right-handed alpha
Helix 14
AB5
B
311 324Right-handed alpha
Helix 15
AB6
B
385 395Right-handed alpha
Helix 16
AB7
B
413 424Right-handed alpha
Helix 17
AB8
B
446 452Right-handed alpha
Helix 18
AB9
B
512 529Right-handed alpha
Helix 19
AC1
B
530 532Right-handed 310
Helix 20
AC2
B
541 545Right-handed 310
Helix 21
AC3
B
551 554Right-handed 310
Helix 22
AC4
B
565 572Right-handed 310
Helix 23
AC5
B
628 633Right-handed alpha
Helix 24
AC6
B
646 652Right-handed alpha
Helix 25
AC7
D
47 59Right-handed alpha
Helix 26
AC8
D
64 77Right-handed alpha
Helix 27
AC9
D
88 104Right-handed alpha
Helix 28
AD1
D
108 128Right-handed alpha
Helix 29
AD2
D
151 159Right-handed alpha
Helix 30
AD3
D
165 184Right-handed alpha
Helix 31
AD4
D
622 633Right-handed alpha
Helix 32
AD5
D
646 650Right-handed 310
Helix 33
AD6
E
188 201Right-handed alpha
Helix 34
AD7
E
207 214Right-handed alpha
Helix 35
AD8
E
229 238Right-handed alpha
Helix 36
AD9
E
255 265Right-handed alpha
Helix 37
AE1
E
280 289Right-handed alpha
Helix 38
AE2
E
311 324Right-handed alpha
Helix 39
AE3
E
385 395Right-handed alpha
Helix 40
AE4
E
413 424Right-handed alpha
Helix 41
AE5
E
446 452Right-handed alpha
Helix 42
AE6
E
512 529Right-handed alpha
Helix 43
AE7
E
530 532Right-handed 310
Helix 44
AE8
E
541 545Right-handed 310
Helix 45
AE9
E
551 554Right-handed 310
Helix 46
AF1
E
565 572Right-handed 310
Helix 47
AF2
E
628 633Right-handed alpha
Helix 48
AF3
E
646 652Right-handed alpha
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There are 14 sheets in PDB entry 10RN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 640first strand
Strand 2
B
548 549anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 673first strand
Strand 2
B
595 597parallel
Strand 3
B
556 557parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
123 128anti-parallel
Strand 3
B
220 225anti-parallel
Strand 4
B
134 146anti-parallel
Strand 5
B
174 176anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
134 146anti-parallel
Strand 3
B
266 268anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 151first strand
Strand 2
B
154 157anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 304first strand
Strand 2
B
403 407parallel
Strand 3
B
330 335parallel
Strand 4
B
347 353anti-parallel
Strand 5
B
370 373anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
577 578first strand
Strand 2
B
609 615anti-parallel
Strand 3
B
620 624anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
639 640first strand
Strand 2
E
548 549anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
671 673first strand
Strand 2
E
595 597parallel
Strand 3
E
556 557parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 117first strand
Strand 2
E
123 128anti-parallel
Strand 3
E
220 225anti-parallel
Strand 4
E
134 146anti-parallel
Strand 5
E
174 176anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 166first strand
Strand 2
E
134 146anti-parallel
Strand 3
E
266 268anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
148 151first strand
Strand 2
E
154 157anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
301 304first strand
Strand 2
E
403 407parallel
Strand 3
E
330 335parallel
Strand 4
E
347 353anti-parallel
Strand 5
E
370 373anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
577 578first strand
Strand 2
E
609 615anti-parallel
Strand 3
E
620 624anti-parallel
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