Analysis of interatomic Contacts of Structural Units in PDB entry:
10SS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10SS entry

There are 14 chains in PDB entry 10SS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	ASP 23	ASN 179
b	ASP 23	ASN 179
c	ASP 23	ASN 179
d	ASP 23	ASN 179
e	ASP 23	ASN 179
f	ASP 23	ASN 179
g	ASP 23	ASN 179
A	ASP 23	ASN 179
B	ASP 23	ASN 179
C	ASP 23	ASN 179
D	ASP 23	ASN 179
E	ASP 23	ASN 179
F	ASP 23	ASN 179
G	ASP 23	ASN 179

There are no helices in PDB entry 10SS

There are 45 sheets in PDB entry 10SS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	47	50	first strand
Strand 2	b	26	32	parallel
Strand 3	a	166	177	anti-parallel
Strand 4	a	82	88	anti-parallel
Strand 5	a	141	142	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	69	70	first strand
Strand 2	a	154	156	anti-parallel
Strand 3	a	113	117	anti-parallel
Strand 4	a	100	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	73	76	first strand
Strand 2	a	148	151	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	38	39	first strand
Strand 2	b	73	76	anti-parallel
Strand 3	b	148	151	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	47	50	first strand
Strand 2	c	26	32	parallel
Strand 3	b	166	178	anti-parallel
Strand 4	b	82	88	anti-parallel
Strand 5	b	141	142	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	123	124	first strand
Strand 2	b	110	117	anti-parallel
Strand 3	b	154	164	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	38	39	first strand
Strand 2	c	73	76	anti-parallel
Strand 3	c	149	151	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	47	50	first strand
Strand 2	d	26	32	parallel
Strand 3	c	166	172	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	69	70	first strand
Strand 2	c	154	158	anti-parallel
Strand 3	c	113	117	anti-parallel
Strand 4	c	100	101	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	141	142	first strand
Strand 2	c	82	87	anti-parallel
Strand 3	c	174	178	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	38	39	first strand
Strand 2	d	73	76	anti-parallel
Strand 3	d	149	151	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	47	49	first strand
Strand 2	e	26	32	parallel
Strand 3	d	166	178	anti-parallel
Strand 4	d	82	88	anti-parallel
Strand 5	d	141	142	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	112	117	first strand
Strand 2	d	154	159	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	38	39	first strand
Strand 2	e	73	76	anti-parallel
Strand 3	e	149	151	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	47	50	first strand
Strand 2	f	26	32	parallel
Strand 3	e	166	178	anti-parallel
Strand 4	e	82	88	anti-parallel
Strand 5	e	141	142	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	112	117	first strand
Strand 2	e	154	159	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	38	39	first strand
Strand 2	f	73	76	anti-parallel
Strand 3	f	149	151	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	47	50	first strand
Strand 2	g	26	32	parallel
Strand 3	f	166	178	anti-parallel
Strand 4	f	82	88	anti-parallel
Strand 5	f	141	142	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	100	101	first strand
Strand 2	f	113	117	anti-parallel
Strand 3	f	154	158	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	38	39	first strand
Strand 2	g	73	76	anti-parallel
Strand 3	g	149	151	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	69	70	first strand
Strand 2	g	154	159	anti-parallel
Strand 3	g	112	117	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	141	142	first strand
Strand 2	g	82	88	anti-parallel
Strand 3	g	173	178	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	73	76	anti-parallel
Strand 3	A	149	151	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	B	26	32	parallel
Strand 3	A	171	178	anti-parallel
Strand 4	A	82	88	anti-parallel
Strand 5	A	141	142	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	B	26	32	parallel
Strand 3	A	166	168	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	112	117	anti-parallel
Strand 4	A	100	101	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	73	76	anti-parallel
Strand 3	B	148	151	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	C	26	31	parallel
Strand 3	B	167	178	anti-parallel
Strand 4	B	82	88	anti-parallel
Strand 5	B	141	142	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	154	159	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	73	76	anti-parallel
Strand 3	C	149	151	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	D	25	32	parallel
Strand 3	C	166	178	anti-parallel
Strand 4	C	82	88	anti-parallel
Strand 5	C	141	142	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	117	first strand
Strand 2	C	154	159	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	73	76	anti-parallel
Strand 3	D	149	151	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	E	26	32	parallel
Strand 3	D	166	172	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	70	first strand
Strand 2	D	154	159	anti-parallel
Strand 3	D	112	117	anti-parallel
Strand 4	D	100	101	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	82	87	anti-parallel
Strand 3	D	174	178	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	73	76	anti-parallel
Strand 3	E	149	151	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	50	first strand
Strand 2	F	25	32	parallel
Strand 3	E	166	178	anti-parallel
Strand 4	E	82	88	anti-parallel
Strand 5	E	141	142	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	70	first strand
Strand 2	E	154	159	anti-parallel
Strand 3	E	112	117	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	39	first strand
Strand 2	F	73	76	anti-parallel
Strand 3	F	149	151	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	50	first strand
Strand 2	G	26	32	parallel
Strand 3	F	166	178	anti-parallel
Strand 4	F	82	88	anti-parallel
Strand 5	F	141	142	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	113	117	anti-parallel
Strand 3	F	154	158	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	75	76	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	142	first strand
Strand 2	G	82	88	anti-parallel
Strand 3	G	173	178	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	117	first strand
Strand 2	G	154	159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10SS

Analysis of interatomic Contacts of Structural Units in PDB entry:
10SS