Analysis of interatomic Contacts of Structural Units in PDB entry:
10TM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10TM entry

There are 6 chains in PDB entry 10TM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 SER 66ARG 347
S
 TYR 1TYR 1
S
 GLY 3GLY 3
F
 SER 66ARG 347
H
 TYR 1TYR 1
H
 GLY 3GLY 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 10TM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
67 98Right-handed alpha
Helix 2
AA2
R
103 121Right-handed alpha
Helix 3
AA3
R
122 133Right-handed alpha
Helix 4
AA4
R
137 173Right-handed alpha
Helix 5
AA5
R
173 181Right-handed alpha
Helix 6
AA6
R
182 197Right-handed alpha
Helix 7
AA7
R
197 207Right-handed alpha
Helix 8
AA8
R
226 242Right-handed alpha
Helix 9
AA9
R
243 262Right-handed alpha
Helix 10
AB1
R
263 268Right-handed 310
Helix 11
AB2
R
272 306Right-handed alpha
Helix 12
AB3
R
313 339Right-handed alpha
Helix 13
AB4
F
67 98Right-handed alpha
Helix 14
AB5
F
103 121Right-handed alpha
Helix 15
AB6
F
122 133Right-handed alpha
Helix 16
AB7
F
137 173Right-handed alpha
Helix 17
AB8
F
173 181Right-handed alpha
Helix 18
AB9
F
182 197Right-handed alpha
Helix 19
AC1
F
197 207Right-handed alpha
Helix 20
AC2
F
226 242Right-handed alpha
Helix 21
AC3
F
243 262Right-handed alpha
Helix 22
AC4
F
263 268Right-handed 310
Helix 23
AC5
F
272 306Right-handed alpha
Helix 24
AC6
F
313 339Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 10TM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
208 213first strand
Strand 2
R
216 221anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
208 213first strand
Strand 2
F
216 221anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il