Analysis of interatomic Contacts of Structural Units in PDB entry:
10TW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10TW entry

There are 4 chains in PDB entry 10TW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 17	ALA 498
B	PHE 18	ALA 498
C	SER 17	ALA 498
D	PHE 18	ALA 498

There are 93 helices in PDB entry 10TW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed 310
Helix 2	AA2	A	25	44	Right-handed alpha
Helix 3	AA3	A	63	78	Right-handed alpha
Helix 4	AA4	A	88	92	Right-handed 310
Helix 5	AA5	A	110	120	Right-handed alpha
Helix 6	AA6	A	138	142	Right-handed 310
Helix 7	AA7	A	149	157	Right-handed alpha
Helix 8	AA8	A	171	176	Right-handed alpha
Helix 9	AA9	A	188	192	Right-handed 310
Helix 10	AB1	A	193	200	Right-handed alpha
Helix 11	AB2	A	203	211	Right-handed alpha
Helix 12	AB3	A	222	227	Right-handed 310
Helix 13	AB4	A	239	243	Right-handed 310
Helix 14	AB5	A	251	259	Right-handed alpha
Helix 15	AB6	A	271	278	Right-handed alpha
Helix 16	AB7	A	279	283	Right-handed 310
Helix 17	AB8	A	297	301	Right-handed 310
Helix 18	AB9	A	308	321	Right-handed alpha
Helix 19	AC1	A	335	342	Right-handed alpha
Helix 20	AC2	A	344	366	Right-handed alpha
Helix 21	AC3	A	430	434	Right-handed 310
Helix 22	AC4	A	467	471	Right-handed 310
Helix 23	AC5	A	478	489	Right-handed alpha
Helix 24	AC6	B	20	24	Right-handed 310
Helix 25	AC7	B	25	44	Right-handed alpha
Helix 26	AC8	B	63	78	Right-handed alpha
Helix 27	AC9	B	87	92	Right-handed 310
Helix 28	AD1	B	110	120	Right-handed alpha
Helix 29	AD2	B	138	143	Right-handed 310
Helix 30	AD3	B	149	157	Right-handed alpha
Helix 31	AD4	B	171	176	Right-handed alpha
Helix 32	AD5	B	188	192	Right-handed 310
Helix 33	AD6	B	193	199	Right-handed alpha
Helix 34	AD7	B	203	211	Right-handed alpha
Helix 35	AD8	B	222	227	Right-handed 310
Helix 36	AD9	B	239	243	Right-handed 310
Helix 37	AE1	B	251	259	Right-handed alpha
Helix 38	AE2	B	271	278	Right-handed alpha
Helix 39	AE3	B	279	283	Right-handed 310
Helix 40	AE4	B	297	301	Right-handed 310
Helix 41	AE5	B	308	321	Right-handed alpha
Helix 42	AE6	B	335	342	Right-handed alpha
Helix 43	AE7	B	344	365	Right-handed alpha
Helix 44	AE8	B	430	434	Right-handed 310
Helix 45	AE9	B	467	471	Right-handed 310
Helix 46	AF1	B	478	488	Right-handed alpha
Helix 47	AF2	C	20	24	Right-handed 310
Helix 48	AF3	C	25	43	Right-handed alpha
Helix 49	AF4	C	63	78	Right-handed alpha
Helix 50	AF5	C	88	92	Right-handed 310
Helix 51	AF6	C	110	120	Right-handed alpha
Helix 52	AF7	C	138	142	Right-handed 310
Helix 53	AF8	C	149	157	Right-handed alpha
Helix 54	AF9	C	171	176	Right-handed alpha
Helix 55	AG1	C	188	192	Right-handed 310
Helix 56	AG2	C	193	199	Right-handed alpha
Helix 57	AG3	C	203	211	Right-handed alpha
Helix 58	AG4	C	222	227	Right-handed 310
Helix 59	AG5	C	251	259	Right-handed alpha
Helix 60	AG6	C	271	278	Right-handed alpha
Helix 61	AG7	C	279	283	Right-handed 310
Helix 62	AG8	C	297	301	Right-handed 310
Helix 63	AG9	C	308	321	Right-handed alpha
Helix 64	AH1	C	335	342	Right-handed alpha
Helix 65	AH2	C	344	366	Right-handed alpha
Helix 66	AH3	C	430	434	Right-handed 310
Helix 67	AH4	C	467	471	Right-handed 310
Helix 68	AH5	C	478	488	Right-handed alpha
Helix 69	AH6	C	494	498	Right-handed 310
Helix 70	AH7	D	20	24	Right-handed 310
Helix 71	AH8	D	25	43	Right-handed alpha
Helix 72	AH9	D	63	78	Right-handed alpha
Helix 73	AI1	D	88	92	Right-handed 310
Helix 74	AI2	D	110	120	Right-handed alpha
Helix 75	AI3	D	138	143	Right-handed 310
Helix 76	AI4	D	149	157	Right-handed alpha
Helix 77	AI5	D	171	176	Right-handed alpha
Helix 78	AI6	D	188	192	Right-handed 310
Helix 79	AI7	D	193	199	Right-handed alpha
Helix 80	AI8	D	203	211	Right-handed alpha
Helix 81	AI9	D	222	227	Right-handed 310
Helix 82	AJ1	D	239	243	Right-handed 310
Helix 83	AJ2	D	251	259	Right-handed alpha
Helix 84	AJ3	D	271	278	Right-handed alpha
Helix 85	AJ4	D	279	283	Right-handed 310
Helix 86	AJ5	D	297	301	Right-handed 310
Helix 87	AJ6	D	308	321	Right-handed alpha
Helix 88	AJ7	D	335	342	Right-handed alpha
Helix 89	AJ8	D	344	366	Right-handed alpha
Helix 90	AJ9	D	430	434	Right-handed 310
Helix 91	AK1	D	467	471	Right-handed 310
Helix 92	AK2	D	478	489	Right-handed alpha
Helix 93	AK3	D	494	498	Right-handed 310

There are 16 sheets in PDB entry 10TW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	269	first strand
Strand 2	A	285	289	parallel
Strand 3	A	217	221	parallel
Strand 4	A	160	168	parallel
Strand 5	A	327	332	parallel
Strand 6	A	53	59	parallel
Strand 7	A	371	377	parallel
Strand 8	A	459	464	anti-parallel
Strand 9	A	94	99	anti-parallel
Strand 10	A	474	476	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	454	455	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	413	417	anti-parallel
Strand 3	A	445	447	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	427	428	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	269	first strand
Strand 2	B	285	289	parallel
Strand 3	B	217	221	parallel
Strand 4	B	160	168	parallel
Strand 5	B	327	332	parallel
Strand 6	B	53	59	parallel
Strand 7	B	371	377	parallel
Strand 8	B	459	464	anti-parallel
Strand 9	B	94	99	anti-parallel
Strand 10	B	474	476	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	454	455	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	385	first strand
Strand 2	B	413	417	anti-parallel
Strand 3	B	445	447	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	424	first strand
Strand 2	B	427	428	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	285	289	parallel
Strand 3	C	217	221	parallel
Strand 4	C	160	168	parallel
Strand 5	C	327	332	parallel
Strand 6	C	53	58	parallel
Strand 7	C	371	376	parallel
Strand 8	C	459	464	anti-parallel
Strand 9	C	94	99	anti-parallel
Strand 10	C	474	476	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	C	454	455	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	413	417	anti-parallel
Strand 3	C	445	447	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	427	428	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	269	first strand
Strand 2	D	285	289	parallel
Strand 3	D	217	221	parallel
Strand 4	D	160	168	parallel
Strand 5	D	327	332	parallel
Strand 6	D	53	59	parallel
Strand 7	D	371	377	parallel
Strand 8	D	459	464	anti-parallel
Strand 9	D	94	99	anti-parallel
Strand 10	D	474	476	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	D	454	455	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	385	first strand
Strand 2	D	413	417	anti-parallel
Strand 3	D	445	447	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	423	424	first strand
Strand 2	D	427	428	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10TW

Analysis of interatomic Contacts of Structural Units in PDB entry:
10TW