Analysis of interatomic Contacts of Structural Units in PDB entry:
10TZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10TZ entry

There are 4 chains in PDB entry 10TZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 17	ALA 500
B	PHE 18	ALA 498
C	SER 17	ALA 498
D	PHE 18	ALA 498

There are 81 helices in PDB entry 10TZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed 310
Helix 2	AA2	A	25	43	Right-handed alpha
Helix 3	AA3	A	63	78	Right-handed alpha
Helix 4	AA4	A	109	120	Right-handed alpha
Helix 5	AA5	A	138	142	Right-handed 310
Helix 6	AA6	A	149	156	Right-handed alpha
Helix 7	AA7	A	171	176	Right-handed alpha
Helix 8	AA8	A	188	192	Right-handed 310
Helix 9	AA9	A	193	199	Right-handed alpha
Helix 10	AB1	A	203	211	Right-handed alpha
Helix 11	AB2	A	223	227	Right-handed 310
Helix 12	AB3	A	251	260	Right-handed alpha
Helix 13	AB4	A	271	277	Right-handed alpha
Helix 14	AB5	A	297	301	Right-handed 310
Helix 15	AB6	A	308	321	Right-handed alpha
Helix 16	AB7	A	335	342	Right-handed alpha
Helix 17	AB8	A	344	366	Right-handed alpha
Helix 18	AB9	A	430	434	Right-handed 310
Helix 19	AC1	A	467	471	Right-handed 310
Helix 20	AC2	A	479	489	Right-handed alpha
Helix 21	AC3	A	494	499	Right-handed alpha
Helix 22	AC4	B	21	24	Right-handed 310
Helix 23	AC5	B	25	43	Right-handed alpha
Helix 24	AC6	B	63	78	Right-handed alpha
Helix 25	AC7	B	88	92	Right-handed 310
Helix 26	AC8	B	111	120	Right-handed alpha
Helix 27	AC9	B	138	142	Right-handed 310
Helix 28	AD1	B	149	157	Right-handed alpha
Helix 29	AD2	B	171	177	Right-handed alpha
Helix 30	AD3	B	193	199	Right-handed alpha
Helix 31	AD4	B	203	211	Right-handed alpha
Helix 32	AD5	B	222	226	Right-handed 310
Helix 33	AD6	B	251	259	Right-handed alpha
Helix 34	AD7	B	271	278	Right-handed alpha
Helix 35	AD8	B	279	283	Right-handed 310
Helix 36	AD9	B	297	301	Right-handed 310
Helix 37	AE1	B	308	321	Right-handed alpha
Helix 38	AE2	B	335	342	Right-handed alpha
Helix 39	AE3	B	344	366	Right-handed alpha
Helix 40	AE4	B	467	471	Right-handed 310
Helix 41	AE5	B	478	489	Right-handed alpha
Helix 42	AE6	C	21	24	Right-handed 310
Helix 43	AE7	C	25	43	Right-handed alpha
Helix 44	AE8	C	63	77	Right-handed alpha
Helix 45	AE9	C	109	120	Right-handed alpha
Helix 46	AF1	C	138	143	Right-handed 310
Helix 47	AF2	C	149	156	Right-handed alpha
Helix 48	AF3	C	171	176	Right-handed alpha
Helix 49	AF4	C	193	199	Right-handed alpha
Helix 50	AF5	C	203	209	Right-handed alpha
Helix 51	AF6	C	222	227	Right-handed 310
Helix 52	AF7	C	239	243	Right-handed 310
Helix 53	AF8	C	251	260	Right-handed alpha
Helix 54	AF9	C	271	277	Right-handed alpha
Helix 55	AG1	C	279	283	Right-handed 310
Helix 56	AG2	C	308	321	Right-handed alpha
Helix 57	AG3	C	335	342	Right-handed alpha
Helix 58	AG4	C	344	366	Right-handed alpha
Helix 59	AG5	C	430	434	Right-handed 310
Helix 60	AG6	C	467	471	Right-handed 310
Helix 61	AG7	C	479	488	Right-handed alpha
Helix 62	AG8	C	494	498	Right-handed 310
Helix 63	AG9	D	20	24	Right-handed 310
Helix 64	AH1	D	25	43	Right-handed alpha
Helix 65	AH2	D	63	77	Right-handed alpha
Helix 66	AH3	D	109	119	Right-handed alpha
Helix 67	AH4	D	149	157	Right-handed alpha
Helix 68	AH5	D	171	176	Right-handed alpha
Helix 69	AH6	D	193	200	Right-handed alpha
Helix 70	AH7	D	203	211	Right-handed alpha
Helix 71	AH8	D	222	226	Right-handed 310
Helix 72	AH9	D	251	260	Right-handed alpha
Helix 73	AI1	D	271	277	Right-handed alpha
Helix 74	AI2	D	297	301	Right-handed 310
Helix 75	AI3	D	308	321	Right-handed alpha
Helix 76	AI4	D	335	342	Right-handed alpha
Helix 77	AI5	D	344	366	Right-handed alpha
Helix 78	AI6	D	430	434	Right-handed 310
Helix 79	AI7	D	467	471	Right-handed 310
Helix 80	AI8	D	476	478	Right-handed 310
Helix 81	AI9	D	479	488	Right-handed alpha

There are 16 sheets in PDB entry 10TZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	269	first strand
Strand 2	A	285	289	parallel
Strand 3	A	217	220	parallel
Strand 4	A	160	164	parallel
Strand 5	A	327	332	parallel
Strand 6	A	53	58	parallel
Strand 7	A	371	376	parallel
Strand 8	A	459	464	anti-parallel
Strand 9	A	94	99	anti-parallel
Strand 10	A	474	476	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	454	455	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	413	418	anti-parallel
Strand 3	A	445	448	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	427	428	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	269	first strand
Strand 2	B	285	289	parallel
Strand 3	B	217	221	parallel
Strand 4	B	160	168	parallel
Strand 5	B	327	332	parallel
Strand 6	B	53	58	parallel
Strand 7	B	371	376	parallel
Strand 8	B	459	464	anti-parallel
Strand 9	B	94	99	anti-parallel
Strand 10	B	474	476	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	385	first strand
Strand 2	B	413	415	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	447	448	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	424	first strand
Strand 2	B	427	428	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	285	289	parallel
Strand 3	C	217	220	parallel
Strand 4	C	160	164	parallel
Strand 5	C	327	332	parallel
Strand 6	C	53	58	parallel
Strand 7	C	371	376	parallel
Strand 8	C	459	464	anti-parallel
Strand 9	C	94	99	anti-parallel
Strand 10	C	474	476	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	413	415	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	418	first strand
Strand 2	C	447	448	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	427	428	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	98	first strand
Strand 2	D	459	464	anti-parallel
Strand 3	D	371	376	anti-parallel
Strand 4	D	53	58	parallel
Strand 5	D	327	332	parallel
Strand 6	D	160	168	parallel
Strand 7	D	217	221	parallel
Strand 8	D	285	289	parallel
Strand 9	D	266	269	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	D	454	455	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	385	first strand
Strand 2	D	413	418	anti-parallel
Strand 3	D	445	448	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	423	424	first strand
Strand 2	D	427	428	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10TZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
10TZ