Analysis of interatomic Contacts of Structural Units in PDB entry:
10UP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10UP entry

There are 2 chains in PDB entry 10UP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 363
B
 MET 1THR 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 10UP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 15Right-handed alpha
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
31 54Right-handed alpha
Helix 4
AA4
A
62 85Right-handed alpha
Helix 5
AA5
A
92 99Right-handed alpha
Helix 6
AA6
A
100 104Right-handed 310
Helix 7
AA7
A
105 132Right-handed alpha
Helix 8
AA8
A
136 161Right-handed alpha
Helix 9
AA9
A
163 167Right-handed 310
Helix 10
AB1
A
168 173Right-handed 310
Helix 11
AB2
A
174 190Right-handed alpha
Helix 12
AB3
A
199 208Right-handed alpha
Helix 13
AB4
A
210 213Right-handed 310
Helix 14
AB5
A
214 239Right-handed alpha
Helix 15
AB6
A
243 253Right-handed alpha
Helix 16
AB7
A
254 259Right-handed 310
Helix 17
AB8
A
262 286Right-handed alpha
Helix 18
AB9
A
293 318Right-handed alpha
Helix 19
AC1
A
328 330Right-handed 310
Helix 20
AC2
A
331 356Right-handed alpha
Helix 21
AC3
A
357 360Right-handed 310
Helix 22
AC4
B
2 15Right-handed alpha
Helix 23
AC5
B
15 28Right-handed alpha
Helix 24
AC6
B
31 54Right-handed alpha
Helix 25
AC7
B
62 85Right-handed alpha
Helix 26
AC8
B
92 99Right-handed alpha
Helix 27
AC9
B
100 104Right-handed 310
Helix 28
AD1
B
105 132Right-handed alpha
Helix 29
AD2
B
136 161Right-handed alpha
Helix 30
AD3
B
168 174Right-handed 310
Helix 31
AD4
B
175 190Right-handed alpha
Helix 32
AD5
B
199 208Right-handed alpha
Helix 33
AD6
B
210 213Right-handed 310
Helix 34
AD7
B
214 239Right-handed alpha
Helix 35
AD8
B
243 253Right-handed alpha
Helix 36
AD9
B
254 259Right-handed 310
Helix 37
AE1
B
262 286Right-handed alpha
Helix 38
AE2
B
293 317Right-handed alpha
Helix 39
AE3
B
322 326Right-handed 310
Helix 40
AE4
B
328 330Right-handed 310
Helix 41
AE5
B
331 356Right-handed alpha
Helix 42
AE6
B
357 361Right-handed 310
Back to top of page
There are no sheets in PDB entry 10UP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il