Analysis of interatomic Contacts of Structural Units in PDB entry:
10UY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10UY entry

There is 1 chain in PDB entry 10UY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 496GLU 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 10UY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
519 525Right-handed alpha
Helix 2
AA2
A
573 580Right-handed alpha
Helix 3
AA3
A
593 597Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 10UY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 562first strand
Strand 2
A
604 612anti-parallel
Strand 3
A
528 538anti-parallel
Strand 4
A
508 512anti-parallel
Strand 5
A
649 651parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 518first strand
Strand 2
A
653 658parallel
Strand 3
A
621 627anti-parallel
Strand 4
A
543 549anti-parallel
Strand 5
A
584 591anti-parallel
Strand 6
A
568 572anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 518first strand
Strand 2
A
653 658parallel
Strand 3
A
621 627anti-parallel
Strand 4
A
543 549anti-parallel
Strand 5
A
638 639anti-parallel
Strand 6
A
645 646anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il