Analysis of interatomic Contacts of Structural Units in PDB entry:
10VM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10VM entry

There are 3 chains in PDB entry 10VM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4GLN 250
G
 GLN 2PRO 200
H
 ALA 2ALA 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 10VM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 22Right-handed alpha
Helix 2
AA2
A
23 42Right-handed alpha
Helix 3
AA3
A
43 64Right-handed alpha
Helix 4
AA4
A
120 127Right-handed alpha
Helix 5
AA5
A
128 158Right-handed alpha
Helix 6
AA6
A
206 218Right-handed alpha
Helix 7
AA7
A
219 232Right-handed alpha
Helix 8
AA8
A
232 245Right-handed alpha
Helix 9
AA9
G
181 185Right-handed 310
Helix 10
AB1
H
132 140Right-handed alpha
Helix 11
AB2
H
199 204Right-handed alpha
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There are 11 sheets in PDB entry 10VM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
99 101anti-parallel
Strand 4
A
78 81anti-parallel
Strand 5
A
166 173anti-parallel
Strand 6
A
179 187anti-parallel
Strand 7
A
190 196anti-parallel
Strand 8
A
201 204anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 13first strand
Strand 2
G
104 108parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
17 20first strand
Strand 2
G
70 76anti-parallel
Strand 3
G
60 65anti-parallel
Strand 4
G
55 57anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
44 49first strand
Strand 2
G
32 37anti-parallel
Strand 3
G
85 90anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
117 121first strand
Strand 2
G
130 135anti-parallel
Strand 3
G
170 175anti-parallel
Strand 4
G
152 153anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 14first strand
Strand 2
H
111 115parallel
Strand 3
H
87 92anti-parallel
Strand 4
H
32 37anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
54 57anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 22first strand
Strand 2
H
75 77anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
128 129first strand
Strand 2
H
145 146anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
141 143first strand
Strand 2
H
196 198anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
148 151first strand
Strand 2
H
189 191anti-parallel
Strand 3
H
178 179anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 162first strand
Strand 2
H
208 215anti-parallel
Strand 3
H
235 241anti-parallel
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