Analysis of interatomic Contacts of Structural Units in PDB entry:
10YE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10YE entry

There are 12 chains in PDB entry 10YE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	LEU 22	GLY 101
C	ARG 11	LYS 118
D	SER 32	SER 124
E	PRO 38	ARG 134
F	LEU 22	GLY 101
G	ARG 11	PRO 117
H	LYS 34	SER 124
I	A 1	T 147
J	A 1	G 76
K	C 77	T 147
L	GLN 387	LEU 594

There are 42 helices in PDB entry 10YE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	49	Right-handed alpha
Helix 2	AA2	A	50	57	Right-handed alpha
Helix 3	AA3	A	63	76	Right-handed alpha
Helix 4	AA4	A	85	114	Right-handed alpha
Helix 5	AA5	A	120	131	Right-handed alpha
Helix 6	AA6	B	24	29	Right-handed 310
Helix 7	AA7	B	30	41	Right-handed alpha
Helix 8	AA8	B	49	76	Right-handed alpha
Helix 9	AA9	B	82	93	Right-handed alpha
Helix 10	AB1	C	16	22	Right-handed alpha
Helix 11	AB2	C	26	37	Right-handed alpha
Helix 12	AB3	C	45	73	Right-handed alpha
Helix 13	AB4	C	79	90	Right-handed alpha
Helix 14	AB5	C	90	97	Right-handed alpha
Helix 15	AB6	C	112	116	Right-handed 310
Helix 16	AB7	D	37	49	Right-handed alpha
Helix 17	AB8	D	55	84	Right-handed alpha
Helix 18	AB9	D	90	102	Right-handed alpha
Helix 19	AC1	D	104	123	Right-handed alpha
Helix 20	AC2	E	44	57	Right-handed alpha
Helix 21	AC3	E	63	79	Right-handed alpha
Helix 22	AC4	E	85	114	Right-handed alpha
Helix 23	AC5	E	120	132	Right-handed alpha
Helix 24	AC6	F	24	29	Right-handed 310
Helix 25	AC7	F	30	41	Right-handed alpha
Helix 26	AC8	F	49	76	Right-handed alpha
Helix 27	AC9	F	82	93	Right-handed alpha
Helix 28	AD1	G	16	22	Right-handed alpha
Helix 29	AD2	G	26	37	Right-handed alpha
Helix 30	AD3	G	45	73	Right-handed alpha
Helix 31	AD4	G	79	90	Right-handed alpha
Helix 32	AD5	G	90	97	Right-handed alpha
Helix 33	AD6	H	37	49	Right-handed alpha
Helix 34	AD7	H	55	84	Right-handed alpha
Helix 35	AD8	H	90	102	Right-handed alpha
Helix 36	AD9	H	103	124	Right-handed alpha
Helix 37	AE1	L	404	412	Right-handed alpha
Helix 38	AE2	L	447	452	Right-handed alpha
Helix 39	AE3	L	457	462	Right-handed alpha
Helix 40	AE4	L	486	490	Right-handed 310
Helix 41	AE5	L	522	534	Right-handed alpha
Helix 42	AE6	L	551	564	Right-handed alpha

There are 12 sheets in PDB entry 10YE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	398	401	first strand
Strand 2	L	584	590	parallel
Strand 3	L	569	574	anti-parallel
Strand 4	L	416	420	anti-parallel
Strand 5	L	547	549	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	436	439	first strand
Strand 2	L	425	432	anti-parallel
Strand 3	L	467	478	anti-parallel
Strand 4	L	501	513	anti-parallel
Strand 5	L	516	517	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	483	485	first strand
Strand 2	L	467	478	anti-parallel
Strand 3	L	501	513	anti-parallel
Strand 4	L	541	543	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10YE

Analysis of interatomic Contacts of Structural Units in PDB entry:
10YE