Analysis of interatomic Contacts of Structural Units in PDB entry:
10ZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10ZO entry

There are 4 chains in PDB entry 10ZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10SER 118
B
 SER 630LEU 697
C
 GLY 8SER 118
D
 ASP 633LEU 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 10ZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
101 105Right-handed 310
Helix 4
AA4
B
649 653Right-handed 310
Helix 5
AA5
B
658 668Right-handed alpha
Helix 6
AA6
B
671 682Right-handed alpha
Helix 7
AA7
B
683 685Right-handed 310
Helix 8
AA8
B
686 697Right-handed alpha
Helix 9
AA9
C
25 29Right-handed 310
Helix 10
AB1
C
62 65Right-handed 310
Helix 11
AB2
C
87 91Right-handed 310
Helix 12
AB3
C
101 103Right-handed 310
Helix 13
AB4
D
649 653Right-handed 310
Helix 14
AB5
D
658 668Right-handed alpha
Helix 15
AB6
D
671 682Right-handed alpha
Helix 16
AB7
D
683 685Right-handed 310
Helix 17
AB8
D
686 697Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 10ZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
112 117parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
47 52anti-parallel
Strand 6
A
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
636 639first strand
Strand 2
B
645 648anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
112 117parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 52anti-parallel
Strand 6
C
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
112 117parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 23first strand
Strand 2
C
78 83anti-parallel
Strand 3
C
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
636 639first strand
Strand 2
D
645 648anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il