Analysis of interatomic Contacts of Structural Units in PDB entry:
10ZY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10ZY entry

There are 7 chains in PDB entry 10ZY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	A 61	A 325
G	SER 66	VAL 229
N	GLY 2	LYS 157
R	MET 1	THR 545
b	SER 2	LYS 271
i	ARG 36	SER 97
m	VAL 195	LEU 292

There are 40 helices in PDB entry 10ZY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	72	77	Right-handed alpha
Helix 2	AA2	G	78	80	Right-handed 310
Helix 3	AA3	G	83	96	Right-handed alpha
Helix 4	AA4	G	101	118	Right-handed alpha
Helix 5	AA5	G	121	126	Right-handed alpha
Helix 6	AA6	G	135	145	Right-handed alpha
Helix 7	AA7	G	159	163	Right-handed 310
Helix 8	AA8	G	165	174	Right-handed alpha
Helix 9	AA9	G	182	190	Right-handed alpha
Helix 10	AB1	G	204	206	Right-handed 310
Helix 11	AB2	G	207	220	Right-handed alpha
Helix 12	AB3	N	3	11	Right-handed alpha
Helix 13	AB4	N	16	32	Right-handed alpha
Helix 14	AB5	N	44	51	Right-handed alpha
Helix 15	AB6	N	97	110	Right-handed alpha
Helix 16	AB7	N	139	144	Right-handed alpha
Helix 17	AB8	N	148	157	Right-handed 310
Helix 18	AB9	R	63	67	Right-handed 310
Helix 19	AC1	R	68	74	Right-handed alpha
Helix 20	AC2	R	76	80	Right-handed 310
Helix 21	AC3	R	101	106	Right-handed alpha
Helix 22	AC4	R	485	489	Right-handed 310
Helix 23	AC5	R	509	516	Right-handed alpha
Helix 24	AC6	R	516	535	Right-handed alpha
Helix 25	AC7	b	3	9	Right-handed alpha
Helix 26	AC8	b	42	56	Right-handed alpha
Helix 27	AC9	b	72	81	Right-handed alpha
Helix 28	AD1	b	141	145	Right-handed 310
Helix 29	AD2	b	146	161	Right-handed alpha
Helix 30	AD3	b	244	271	Right-handed alpha
Helix 31	AD4	i	37	49	Right-handed alpha
Helix 32	AD5	i	51	65	Right-handed alpha
Helix 33	AD6	i	65	78	Right-handed alpha
Helix 34	AD7	i	79	97	Right-handed alpha
Helix 35	AD8	m	197	209	Right-handed alpha
Helix 36	AD9	m	211	215	Right-handed 310
Helix 37	AE1	m	216	220	Right-handed 310
Helix 38	AE2	m	229	233	Right-handed 310
Helix 39	AE3	m	238	264	Right-handed alpha
Helix 40	AE4	m	281	292	Right-handed alpha

There are 13 sheets in PDB entry 10ZY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	82	83	first strand
Strand 2	G	67	70	anti-parallel
Strand 3	R	122	125	anti-parallel
Strand 4	R	111	113	anti-parallel
Strand 5	R	96	97	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	134	first strand
Strand 2	G	197	200	anti-parallel
Strand 3	G	150	154	anti-parallel
Strand 4	G	177	180	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	36	39	first strand
Strand 2	N	59	67	anti-parallel
Strand 3	N	127	135	anti-parallel
Strand 4	N	114	123	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	2	4	first strand
Strand 2	R	145	153	anti-parallel
Strand 3	R	7	8	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	2	4	first strand
Strand 2	R	145	153	anti-parallel
Strand 3	R	156	165	anti-parallel
Strand 4	R	196	204	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	209	217	first strand
Strand 2	R	226	234	anti-parallel
Strand 3	R	239	243	anti-parallel
Strand 4	R	254	256	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	289	294	first strand
Strand 2	R	301	306	anti-parallel
Strand 3	R	311	315	anti-parallel
Strand 4	R	320	325	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	334	339	first strand
Strand 2	R	346	351	anti-parallel
Strand 3	R	355	360	anti-parallel
Strand 4	R	370	374	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	381	386	first strand
Strand 2	R	391	396	anti-parallel
Strand 3	R	400	405	anti-parallel
Strand 4	R	416	419	anti-parallel
Strand 5	m	274	276	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	425	430	first strand
Strand 2	R	437	442	anti-parallel
Strand 3	R	447	452	anti-parallel
Strand 4	R	465	471	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	477	482	first strand
Strand 2	R	491	496	anti-parallel
Strand 3	R	501	505	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	59	61	first strand
Strand 2	b	33	37	parallel
Strand 3	b	85	92	parallel
Strand 4	b	96	102	anti-parallel
Strand 5	b	109	118	anti-parallel
Strand 6	b	211	229	anti-parallel
Strand 7	b	232	238	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	59	61	first strand
Strand 2	b	33	37	parallel
Strand 3	b	85	92	parallel
Strand 4	b	96	102	anti-parallel
Strand 5	b	109	118	anti-parallel
Strand 6	b	211	229	anti-parallel
Strand 7	b	185	194	anti-parallel
Strand 8	b	175	182	anti-parallel
Strand 9	b	136	139	parallel
Strand 10	m	222	224	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10ZY

Analysis of interatomic Contacts of Structural Units in PDB entry:
10ZY