Analysis of interatomic Contacts of Structural Units in PDB entry:
11AA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11AA entry

There are 17 chains in PDB entry 11AA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	G 1	U 329
2	U 101	U 158
3	C 1	A 232
7	ARG 175	ASN 226
G	GLU 54	GLY 236
H	GLU 142	ASN 371
K	ALA 31	ILE 350
L	ASN 12	LYS 122
N	GLY 2	PHE 180
b	GLN 26	GLN 255
i	SER 19	ARG 99
m	VAL 195	LYS 291
n	PHE 15	TRP 460
o	GLU 88	TRP 220
p	VAL 41	ILE 489
s	PRO 122	ARG 399
t	LYS 54	ASN 322

There are130 helices in PDB entry 11AA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	7	178	193	Right-handed alpha
Helix 2	AA2	7	195	201	Right-handed alpha
Helix 3	AA3	7	211	226	Right-handed alpha
Helix 4	AA4	G	55	69	Right-handed alpha
Helix 5	AA5	G	72	77	Right-handed alpha
Helix 6	AA6	G	78	80	Right-handed 310
Helix 7	AA7	G	83	95	Right-handed alpha
Helix 8	AA8	G	96	98	Right-handed 310
Helix 9	AA9	G	101	119	Right-handed alpha
Helix 10	AB1	G	135	145	Right-handed alpha
Helix 11	AB2	G	160	174	Right-handed alpha
Helix 12	AB3	G	182	190	Right-handed alpha
Helix 13	AB4	G	204	206	Right-handed 310
Helix 14	AB5	G	207	222	Right-handed alpha
Helix 15	AB6	G	222	227	Right-handed alpha
Helix 16	AB7	H	143	148	Right-handed alpha
Helix 17	AB8	H	157	162	Right-handed alpha
Helix 18	AB9	H	162	173	Right-handed alpha
Helix 19	AC1	H	218	226	Right-handed alpha
Helix 20	AC2	H	245	254	Right-handed alpha
Helix 21	AC3	H	276	278	Right-handed 310
Helix 22	AC4	H	291	300	Right-handed alpha
Helix 23	AC5	H	301	303	Right-handed 310
Helix 24	AC6	H	329	338	Right-handed alpha
Helix 25	AC7	K	33	49	Right-handed alpha
Helix 26	AC8	K	69	75	Right-handed alpha
Helix 27	AC9	K	107	115	Right-handed alpha
Helix 28	AD1	K	129	135	Right-handed 310
Helix 29	AD2	K	136	145	Right-handed alpha
Helix 30	AD3	K	157	163	Right-handed alpha
Helix 31	AD4	K	166	175	Right-handed alpha
Helix 32	AD5	K	186	188	Right-handed 310
Helix 33	AD6	K	189	194	Right-handed alpha
Helix 34	AD7	K	197	201	Right-handed 310
Helix 35	AD8	K	218	232	Right-handed alpha
Helix 36	AD9	K	255	274	Right-handed alpha
Helix 37	AE1	K	295	302	Right-handed 310
Helix 38	AE2	K	327	337	Right-handed alpha
Helix 39	AE3	K	338	340	Right-handed 310
Helix 40	AE4	K	341	346	Right-handed alpha
Helix 41	AE5	L	13	26	Right-handed alpha
Helix 42	AE6	L	62	67	Right-handed alpha
Helix 43	AE7	L	76	83	Right-handed alpha
Helix 44	AE8	L	86	94	Right-handed alpha
Helix 45	AE9	L	105	122	Right-handed alpha
Helix 46	AF1	N	3	11	Right-handed alpha
Helix 47	AF2	N	16	32	Right-handed alpha
Helix 48	AF3	N	44	51	Right-handed alpha
Helix 49	AF4	N	97	109	Right-handed alpha
Helix 50	AF5	N	139	144	Right-handed alpha
Helix 51	AF6	N	148	157	Right-handed 310
Helix 52	AF7	N	159	163	Right-handed 310
Helix 53	AF8	N	165	172	Right-handed alpha
Helix 54	AF9	b	42	56	Right-handed alpha
Helix 55	AG1	b	72	81	Right-handed alpha
Helix 56	AG2	b	140	145	Right-handed 310
Helix 57	AG3	b	146	161	Right-handed alpha
Helix 58	AG4	b	244	255	Right-handed alpha
Helix 59	AG5	i	27	31	Right-handed 310
Helix 60	AG6	i	34	49	Right-handed alpha
Helix 61	AG7	i	51	64	Right-handed alpha
Helix 62	AG8	i	65	78	Right-handed alpha
Helix 63	AG9	i	79	99	Right-handed alpha
Helix 64	AH1	m	197	209	Right-handed alpha
Helix 65	AH2	m	211	215	Right-handed 310
Helix 66	AH3	m	216	220	Right-handed 310
Helix 67	AH4	m	228	233	Right-handed alpha
Helix 68	AH5	m	238	264	Right-handed alpha
Helix 69	AH6	m	281	291	Right-handed alpha
Helix 70	AH7	n	17	26	Right-handed alpha
Helix 71	AH8	n	28	40	Right-handed alpha
Helix 72	AH9	n	64	73	Right-handed alpha
Helix 73	AI1	n	74	96	Right-handed alpha
Helix 74	AI2	n	98	108	Right-handed alpha
Helix 75	AI3	n	114	122	Right-handed alpha
Helix 76	AI4	n	124	131	Right-handed alpha
Helix 77	AI5	n	132	145	Right-handed alpha
Helix 78	AI6	n	152	174	Right-handed alpha
Helix 79	AI7	n	214	240	Right-handed alpha
Helix 80	AI8	n	249	254	Right-handed alpha
Helix 81	AI9	n	354	359	Right-handed 310
Helix 82	AJ1	n	372	383	Right-handed alpha
Helix 83	AJ2	n	391	394	Right-handed 310
Helix 84	AJ3	n	429	439	Right-handed alpha
Helix 85	AJ4	n	444	448	Right-handed 310
Helix 86	AJ5	o	103	112	Right-handed alpha
Helix 87	AJ6	o	141	153	Right-handed alpha
Helix 88	AJ7	o	192	214	Right-handed alpha
Helix 89	AJ8	p	43	47	Right-handed 310
Helix 90	AJ9	p	50	61	Right-handed alpha
Helix 91	AK1	p	66	79	Right-handed alpha
Helix 92	AK2	p	91	108	Right-handed alpha
Helix 93	AK3	p	110	114	Right-handed 310
Helix 94	AK4	p	123	138	Right-handed alpha
Helix 95	AK5	p	153	164	Right-handed alpha
Helix 96	AK6	p	171	182	Right-handed alpha
Helix 97	AK7	p	197	205	Right-handed alpha
Helix 98	AK8	p	206	217	Right-handed alpha
Helix 99	AK9	p	232	243	Right-handed alpha
Helix 100	AL1	p	272	274	Right-handed 310
Helix 101	AL2	p	275	287	Right-handed alpha
Helix 102	AL3	p	298	312	Right-handed alpha
Helix 103	AL4	p	324	338	Right-handed alpha
Helix 104	AL5	p	348	351	Right-handed 310
Helix 105	AL6	p	369	377	Right-handed alpha
Helix 106	AL7	p	395	399	Right-handed 310
Helix 107	AL8	p	400	408	Right-handed alpha
Helix 108	AL9	p	425	436	Right-handed alpha
Helix 109	AM1	p	436	456	Right-handed alpha
Helix 110	AM2	p	469	477	Right-handed alpha
Helix 111	AM3	s	161	166	Right-handed 310
Helix 112	AM4	s	262	267	Right-handed 310
Helix 113	AM5	s	269	285	Right-handed alpha
Helix 114	AM6	s	290	305	Right-handed alpha
Helix 115	AM7	s	333	337	Right-handed 310
Helix 116	AM8	s	341	345	Right-handed 310
Helix 117	AM9	s	347	357	Right-handed alpha
Helix 118	AN1	s	358	362	Right-handed 310
Helix 119	AN2	s	373	377	Right-handed 310
Helix 120	AN3	s	382	397	Right-handed alpha
Helix 121	AN4	t	57	87	Right-handed alpha
Helix 122	AN5	t	156	166	Right-handed alpha
Helix 123	AN6	t	183	190	Right-handed alpha
Helix 124	AN7	t	200	212	Right-handed alpha
Helix 125	AN8	t	231	240	Right-handed alpha
Helix 126	AN9	t	241	243	Right-handed 310
Helix 127	AO1	t	246	257	Right-handed alpha
Helix 128	AO2	t	260	268	Right-handed alpha
Helix 129	AO3	t	281	299	Right-handed alpha
Helix 130	AO4	t	313	322	Right-handed alpha

There are 22 sheets in PDB entry 11AA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	71	first strand
Strand 2	G	234	235	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	134	first strand
Strand 2	G	197	200	anti-parallel
Strand 3	G	150	154	anti-parallel
Strand 4	G	177	180	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	203	209	first strand
Strand 2	H	234	241	anti-parallel
Strand 3	H	149	156	anti-parallel
Strand 4	H	265	268	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	305	312	first strand
Strand 2	H	319	327	anti-parallel
Strand 3	H	280	284	anti-parallel
Strand 4	H	365	368	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	64	65	first strand
Strand 2	p	412	416	parallel
Strand 3	p	266	270	parallel
Strand 4	p	389	394	parallel
Strand 5	p	360	363	parallel
Strand 6	p	291	296	parallel
Strand 7	p	341	346	parallel
Strand 8	p	317	319	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	243	250	first strand
Strand 2	K	77	84	anti-parallel
Strand 3	K	276	283	anti-parallel
Strand 4	K	289	293	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	97	101	first strand
Strand 2	K	233	237	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	153	156	first strand
Strand 2	K	123	127	parallel
Strand 3	K	179	183	parallel
Strand 4	K	207	209	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	212	213	first strand
Strand 2	K	216	217	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	59	first strand
Strand 2	L	69	71	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	36	39	first strand
Strand 2	N	59	67	anti-parallel
Strand 3	N	127	135	anti-parallel
Strand 4	N	114	123	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	59	61	first strand
Strand 2	b	33	37	parallel
Strand 3	b	85	92	parallel
Strand 4	b	96	102	anti-parallel
Strand 5	b	109	118	anti-parallel
Strand 6	b	218	227	anti-parallel
Strand 7	b	185	195	anti-parallel
Strand 8	b	235	238	first strand

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	210	214	first strand
Strand 2	b	185	195	anti-parallel
Strand 3	b	218	227	anti-parallel
Strand 4	b	175	182	first strand
Strand 5	b	136	139	parallel
Strand 6	m	222	224	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	176	182	first strand
Strand 2	n	185	192	anti-parallel
Strand 3	n	195	201	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	247	248	first strand
Strand 2	n	262	263	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	386	389	first strand
Strand 2	n	364	367	parallel
Strand 3	n	409	411	parallel
Strand 4	n	425	427	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	117	124	first strand
Strand 2	o	131	139	anti-parallel
Strand 3	o	89	96	anti-parallel
Strand 4	o	160	168	anti-parallel
Strand 5	o	155	157	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	145	148	first strand
Strand 2	p	167	170	parallel
Strand 3	p	117	120	parallel
Strand 4	p	192	196	parallel
Strand 5	p	223	228	parallel
Strand 6	p	82	85	parallel
Strand 7	p	248	251	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	124	127	first strand
Strand 2	s	133	136	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	170	173	first strand
Strand 2	s	179	181	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	129	134	first strand
Strand 2	t	99	104	anti-parallel
Strand 3	t	309	312	parallel
Strand 4	t	194	197	parallel
Strand 5	t	140	146	anti-parallel
Strand 6	t	173	179	anti-parallel
Strand 7	t	271	272	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	213	216	first strand
Strand 2	t	225	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11AA

Analysis of interatomic Contacts of Structural Units in PDB entry:
11AA