Analysis of interatomic Contacts of Structural Units in PDB entry:
11BC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11BC entry

There are 6 chains in PDB entry 11BC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 55ASP 349
B
 ARG 55ASP 349
C
 ASP 7GLU 69
D
 ASP 7GLU 69
F
 SER 8GLU 69
E
 ASP 7GLU 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 11BC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 60Right-handed 310
Helix 2
AA2
A
62 69Right-handed alpha
Helix 3
AA3
A
71 122Right-handed alpha
Helix 4
AA4
A
137 155Right-handed alpha
Helix 5
AA5
A
169 178Right-handed alpha
Helix 6
AA6
A
189 194Right-handed alpha
Helix 7
AA7
A
243 247Right-handed 310
Helix 8
AA8
A
296 300Right-handed 310
Helix 9
AA9
A
313 333Right-handed alpha
Helix 10
AB1
A
338 343Right-handed alpha
Helix 11
AB2
B
55 61Right-handed 310
Helix 12
AB3
B
62 69Right-handed alpha
Helix 13
AB4
B
71 122Right-handed alpha
Helix 14
AB5
B
137 155Right-handed alpha
Helix 15
AB6
B
169 178Right-handed alpha
Helix 16
AB7
B
180 184Right-handed 310
Helix 17
AB8
B
189 194Right-handed alpha
Helix 18
AB9
B
243 247Right-handed 310
Helix 19
AC1
B
314 333Right-handed alpha
Helix 20
AC2
B
338 343Right-handed alpha
Helix 21
AC3
C
8 25Right-handed alpha
Helix 22
AC4
C
34 65Right-handed alpha
Helix 23
AC5
D
8 25Right-handed alpha
Helix 24
AC6
D
34 65Right-handed alpha
Helix 25
AC7
F
9 24Right-handed alpha
Helix 26
AC8
F
34 65Right-handed alpha
Helix 27
AC9
E
8 25Right-handed alpha
Helix 28
AD1
E
34 65Right-handed alpha
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There are 5 sheets in PDB entry 11BC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 203first strand
Strand 2
A
211 218anti-parallel
Strand 3
A
228 235anti-parallel
Strand 4
A
252 256anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
291 293anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
287 288anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 203first strand
Strand 2
B
211 218anti-parallel
Strand 3
B
228 235anti-parallel
Strand 4
B
252 256anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
288 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il