Analysis of interatomic Contacts of Structural Units in PDB entry:
11CJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11CJ entry

There are 4 chains in PDB entry 11CJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 198TRP 753
B
 SER 198TRP 753
C
 SER 198TRP 753
D
 SER 198TRP 753
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 11CJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
204 212Right-handed alpha
Helix 2
AA2
A
214 225Right-handed alpha
Helix 3
AA3
A
251 259Right-handed alpha
Helix 4
AA4
A
261 270Right-handed alpha
Helix 5
AA5
A
287 296Right-handed alpha
Helix 6
AA6
A
299 321Right-handed alpha
Helix 7
AA7
A
325 329Right-handed 310
Helix 8
AA8
A
336 345Right-handed alpha
Helix 9
AA9
A
346 355Right-handed alpha
Helix 10
AB1
A
363 367Right-handed 310
Helix 11
AB2
A
395 402Right-handed alpha
Helix 12
AB3
A
416 430Right-handed alpha
Helix 13
AB4
A
430 455Right-handed alpha
Helix 14
AB5
A
469 500Right-handed alpha
Helix 15
AB6
A
510 531Right-handed alpha
Helix 16
AB7
A
532 533Right-handed 310
Helix 17
AB8
A
534 535Right-handed 310
Helix 18
AB9
A
536 551Right-handed alpha
Helix 19
AC1
A
552 557Right-handed 310
Helix 20
AC2
A
559 599Right-handed alpha
Helix 21
AC3
A
630 640Right-handed alpha
Helix 22
AC4
A
656 672Right-handed alpha
Helix 23
AC5
A
674 690Right-handed alpha
Helix 24
AC6
A
690 713Right-handed alpha
Helix 25
AC7
B
204 212Right-handed alpha
Helix 26
AC8
B
214 225Right-handed alpha
Helix 27
AC9
B
251 259Right-handed alpha
Helix 28
AD1
B
261 270Right-handed alpha
Helix 29
AD2
B
287 296Right-handed alpha
Helix 30
AD3
B
299 321Right-handed alpha
Helix 31
AD4
B
325 329Right-handed 310
Helix 32
AD5
B
336 345Right-handed alpha
Helix 33
AD6
B
346 355Right-handed alpha
Helix 34
AD7
B
363 367Right-handed 310
Helix 35
AD8
B
395 402Right-handed alpha
Helix 36
AD9
B
416 430Right-handed alpha
Helix 37
AE1
B
430 455Right-handed alpha
Helix 38
AE2
B
469 500Right-handed alpha
Helix 39
AE3
B
510 531Right-handed alpha
Helix 40
AE4
B
532 533Right-handed 310
Helix 41
AE5
B
534 535Right-handed 310
Helix 42
AE6
B
536 551Right-handed alpha
Helix 43
AE7
B
552 557Right-handed 310
Helix 44
AE8
B
559 599Right-handed alpha
Helix 45
AE9
B
630 640Right-handed alpha
Helix 46
AF1
B
656 672Right-handed alpha
Helix 47
AF2
B
674 690Right-handed alpha
Helix 48
AF3
B
690 713Right-handed alpha
Helix 49
AF4
C
204 212Right-handed alpha
Helix 50
AF5
C
214 225Right-handed alpha
Helix 51
AF6
C
251 259Right-handed alpha
Helix 52
AF7
C
261 270Right-handed alpha
Helix 53
AF8
C
287 296Right-handed alpha
Helix 54
AF9
C
299 321Right-handed alpha
Helix 55
AG1
C
325 329Right-handed 310
Helix 56
AG2
C
336 345Right-handed alpha
Helix 57
AG3
C
346 355Right-handed alpha
Helix 58
AG4
C
363 367Right-handed 310
Helix 59
AG5
C
395 402Right-handed alpha
Helix 60
AG6
C
416 430Right-handed alpha
Helix 61
AG7
C
430 455Right-handed alpha
Helix 62
AG8
C
469 500Right-handed alpha
Helix 63
AG9
C
510 531Right-handed alpha
Helix 64
AH1
C
532 533Right-handed 310
Helix 65
AH2
C
534 535Right-handed 310
Helix 66
AH3
C
536 551Right-handed alpha
Helix 67
AH4
C
552 557Right-handed 310
Helix 68
AH5
C
559 599Right-handed alpha
Helix 69
AH6
C
630 640Right-handed alpha
Helix 70
AH7
C
656 672Right-handed alpha
Helix 71
AH8
C
674 690Right-handed alpha
Helix 72
AH9
C
690 713Right-handed alpha
Helix 73
AI1
D
204 212Right-handed alpha
Helix 74
AI2
D
214 225Right-handed alpha
Helix 75
AI3
D
251 259Right-handed alpha
Helix 76
AI4
D
261 270Right-handed alpha
Helix 77
AI5
D
287 296Right-handed alpha
Helix 78
AI6
D
299 321Right-handed alpha
Helix 79
AI7
D
325 329Right-handed 310
Helix 80
AI8
D
336 345Right-handed alpha
Helix 81
AI9
D
346 355Right-handed alpha
Helix 82
AJ1
D
363 367Right-handed 310
Helix 83
AJ2
D
395 402Right-handed alpha
Helix 84
AJ3
D
416 430Right-handed alpha
Helix 85
AJ4
D
430 455Right-handed alpha
Helix 86
AJ5
D
469 500Right-handed alpha
Helix 87
AJ6
D
510 531Right-handed alpha
Helix 88
AJ7
D
532 533Right-handed 310
Helix 89
AJ8
D
534 535Right-handed 310
Helix 90
AJ9
D
536 551Right-handed alpha
Helix 91
AK1
D
552 557Right-handed 310
Helix 92
AK2
D
559 599Right-handed alpha
Helix 93
AK3
D
630 640Right-handed alpha
Helix 94
AK4
D
656 672Right-handed alpha
Helix 95
AK5
D
674 690Right-handed alpha
Helix 96
AK6
D
690 713Right-handed alpha
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There are 4 sheets in PDB entry 11CJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 374first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
737 748anti-parallel
Strand 4
A
725 731anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 374first strand
Strand 2
B
378 383anti-parallel
Strand 3
B
737 748anti-parallel
Strand 4
B
725 731anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 374first strand
Strand 2
C
378 383anti-parallel
Strand 3
C
737 748anti-parallel
Strand 4
C
725 731anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
369 374first strand
Strand 2
D
378 383anti-parallel
Strand 3
D
737 748anti-parallel
Strand 4
D
725 731anti-parallel
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