Analysis of interatomic Contacts of Structural Units in PDB entry:
11DR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11DR entry

There are 3 chains in PDB entry 11DR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 378	GLN 659
B	GLN 378	GLN 659
C	GLN 378	GLN 659

There are 18 helices in PDB entry 11DR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	422	429	Right-handed alpha
Helix 2	AA2	A	554	561	Right-handed alpha
Helix 3	AA3	A	566	585	Right-handed alpha
Helix 4	AA4	A	587	594	Right-handed alpha
Helix 5	AA5	A	594	604	Right-handed alpha
Helix 6	AA6	A	647	659	Right-handed alpha
Helix 7	AA7	B	422	429	Right-handed alpha
Helix 8	AA8	B	554	561	Right-handed alpha
Helix 9	AA9	B	566	584	Right-handed alpha
Helix 10	AB1	B	587	594	Right-handed alpha
Helix 11	AB2	B	594	604	Right-handed alpha
Helix 12	AB3	B	647	659	Right-handed alpha
Helix 13	AB4	C	422	429	Right-handed alpha
Helix 14	AB5	C	554	561	Right-handed alpha
Helix 15	AB6	C	566	584	Right-handed alpha
Helix 16	AB7	C	587	594	Right-handed alpha
Helix 17	AB8	C	594	604	Right-handed alpha
Helix 18	AB9	C	647	659	Right-handed alpha

There are 18 sheets in PDB entry 11DR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	412	414	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	462	first strand
Strand 2	A	485	488	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	482	first strand
Strand 2	A	466	472	anti-parallel
Strand 3	A	493	495	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	482	first strand
Strand 2	A	466	472	anti-parallel
Strand 3	A	516	517	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	502	first strand
Strand 2	A	507	513	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	530	first strand
Strand 2	A	536	547	anti-parallel
Strand 3	A	633	645	anti-parallel
Strand 4	A	626	627	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	387	392	anti-parallel
Strand 3	B	412	414	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	462	first strand
Strand 2	B	485	488	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	482	first strand
Strand 2	B	466	472	anti-parallel
Strand 3	B	493	495	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	482	first strand
Strand 2	B	466	472	anti-parallel
Strand 3	B	516	517	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	502	first strand
Strand 2	B	507	513	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	530	first strand
Strand 2	B	536	547	anti-parallel
Strand 3	B	633	645	anti-parallel
Strand 4	B	626	627	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	387	392	anti-parallel
Strand 3	C	412	414	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	462	first strand
Strand 2	C	485	488	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	482	first strand
Strand 2	C	466	472	anti-parallel
Strand 3	C	493	495	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	482	first strand
Strand 2	C	466	472	anti-parallel
Strand 3	C	516	517	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	502	first strand
Strand 2	C	507	513	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	530	first strand
Strand 2	C	536	547	anti-parallel
Strand 3	C	633	645	anti-parallel
Strand 4	C	626	627	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11DR

Analysis of interatomic Contacts of Structural Units in PDB entry:
11DR