Analysis of interatomic Contacts of Structural Units in PDB entry:
11ED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11ED entry

There are 3 chains in PDB entry 11ED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	ASN 5	SER 921
U	GLY 2	GLY 278
g	THR 194	PRO 438

There are 51 helices in PDB entry 11ED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	5	18	Right-handed alpha
Helix 2	AA2	J	18	27	Right-handed alpha
Helix 3	AA3	J	56	81	Right-handed alpha
Helix 4	AA4	J	81	97	Right-handed alpha
Helix 5	AA5	J	117	136	Right-handed alpha
Helix 6	AA6	J	137	151	Right-handed alpha
Helix 7	AA7	J	162	170	Right-handed alpha
Helix 8	AA8	J	314	325	Right-handed alpha
Helix 9	AA9	J	422	432	Right-handed alpha
Helix 10	AB1	J	439	463	Right-handed alpha
Helix 11	AB2	J	464	467	Right-handed 310
Helix 12	AB3	J	470	490	Right-handed alpha
Helix 13	AB4	J	516	521	Right-handed alpha
Helix 14	AB5	J	521	543	Right-handed alpha
Helix 15	AB6	J	559	572	Right-handed alpha
Helix 16	AB7	J	590	595	Right-handed alpha
Helix 17	AB8	J	627	643	Right-handed alpha
Helix 18	AB9	J	645	652	Right-handed alpha
Helix 19	AC1	J	661	664	Right-handed 310
Helix 20	AC2	J	665	693	Right-handed alpha
Helix 21	AC3	J	695	708	Right-handed alpha
Helix 22	AC4	J	713	721	Right-handed alpha
Helix 23	AC5	J	723	728	Right-handed alpha
Helix 24	AC6	J	754	769	Right-handed alpha
Helix 25	AC7	J	781	805	Right-handed alpha
Helix 26	AC8	J	806	811	Right-handed 310
Helix 27	AC9	J	818	840	Right-handed alpha
Helix 28	AD1	J	843	845	Right-handed 310
Helix 29	AD2	J	846	851	Right-handed alpha
Helix 30	AD3	J	856	892	Right-handed alpha
Helix 31	AD4	J	910	921	Right-handed alpha
Helix 32	AD5	U	3	15	Right-handed alpha
Helix 33	AD6	U	16	24	Right-handed alpha
Helix 34	AD7	U	37	46	Right-handed alpha
Helix 35	AD8	U	50	59	Right-handed alpha
Helix 36	AD9	U	135	147	Right-handed alpha
Helix 37	AE1	U	197	217	Right-handed alpha
Helix 38	AE2	U	236	241	Right-handed alpha
Helix 39	AE3	U	244	263	Right-handed alpha
Helix 40	AE4	U	265	277	Right-handed alpha
Helix 41	AE5	g	195	218	Right-handed alpha
Helix 42	AE6	g	237	246	Right-handed alpha
Helix 43	AE7	g	267	271	Right-handed 310
Helix 44	AE8	g	274	282	Right-handed alpha
Helix 45	AE9	g	283	288	Right-handed 310
Helix 46	AF1	g	310	314	Right-handed 310
Helix 47	AF2	g	374	380	Right-handed alpha
Helix 48	AF3	g	385	396	Right-handed alpha
Helix 49	AF4	g	401	411	Right-handed alpha
Helix 50	AF5	g	412	415	Right-handed 310
Helix 51	AF6	g	416	437	Right-handed alpha

There are 9 sheets in PDB entry 11ED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	107	110	first strand
Strand 2	J	771	774	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	353	355	first strand
Strand 2	J	156	161	anti-parallel
Strand 3	J	501	504	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	335	336	first strand
Strand 2	J	493	497	parallel
Strand 3	J	376	380	anti-parallel
Strand 4	J	363	364	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	545	551	first strand
Strand 2	J	614	620	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	62	66	first strand
Strand 2	U	179	183	anti-parallel
Strand 3	U	99	103	anti-parallel
Strand 4	U	154	155	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	73	75	first strand
Strand 2	U	81	85	anti-parallel
Strand 3	U	165	169	anti-parallel
Strand 4	U	158	162	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	219	220	first strand
Strand 2	g	225	226	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	235	236	first strand
Strand 2	g	318	322	parallel
Strand 3	g	294	298	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	355	356	first strand
Strand 2	g	359	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11ED

Analysis of interatomic Contacts of Structural Units in PDB entry:
11ED