Analysis of interatomic Contacts of Structural Units in PDB entry:
11EF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11EF entry

There are 4 chains in PDB entry 11EF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLN 254
B
 LYS 3GLN 254
C
 LYS 3GLN 254
D
 LYS 3GLN 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 11EF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
30 33Right-handed 310
Helix 3
AA3
A
44 46Right-handed 310
Helix 4
AA4
A
47 56Right-handed alpha
Helix 5
AA5
A
80 87Right-handed alpha
Helix 6
AA6
A
96 103Right-handed alpha
Helix 7
AA7
A
106 120Right-handed alpha
Helix 8
AA8
A
131 137Right-handed alpha
Helix 9
AA9
A
139 153Right-handed alpha
Helix 10
AB1
A
158 162Right-handed 310
Helix 11
AB2
A
182 202Right-handed alpha
Helix 12
AB3
A
217 223Right-handed alpha
Helix 13
AB4
A
233 237Right-handed 310
Helix 14
AB5
A
238 254Right-handed alpha
Helix 15
AB6
B
15 29Right-handed alpha
Helix 16
AB7
B
30 33Right-handed 310
Helix 17
AB8
B
47 56Right-handed alpha
Helix 18
AB9
B
80 87Right-handed alpha
Helix 19
AC1
B
96 103Right-handed alpha
Helix 20
AC2
B
106 120Right-handed alpha
Helix 21
AC3
B
131 137Right-handed alpha
Helix 22
AC4
B
139 153Right-handed alpha
Helix 23
AC5
B
158 162Right-handed 310
Helix 24
AC6
B
182 202Right-handed alpha
Helix 25
AC7
B
217 223Right-handed alpha
Helix 26
AC8
B
233 237Right-handed 310
Helix 27
AC9
B
238 254Right-handed alpha
Helix 28
AD1
C
15 29Right-handed alpha
Helix 29
AD2
C
30 33Right-handed 310
Helix 30
AD3
C
47 56Right-handed alpha
Helix 31
AD4
C
80 87Right-handed alpha
Helix 32
AD5
C
96 103Right-handed alpha
Helix 33
AD6
C
106 120Right-handed alpha
Helix 34
AD7
C
131 137Right-handed alpha
Helix 35
AD8
C
139 152Right-handed alpha
Helix 36
AD9
C
158 162Right-handed 310
Helix 37
AE1
C
182 202Right-handed alpha
Helix 38
AE2
C
217 223Right-handed alpha
Helix 39
AE3
C
233 237Right-handed 310
Helix 40
AE4
C
238 254Right-handed alpha
Helix 41
AE5
D
15 29Right-handed alpha
Helix 42
AE6
D
30 33Right-handed 310
Helix 43
AE7
D
44 56Right-handed alpha
Helix 44
AE8
D
80 87Right-handed alpha
Helix 45
AE9
D
96 103Right-handed alpha
Helix 46
AF1
D
106 120Right-handed alpha
Helix 47
AF2
D
131 137Right-handed alpha
Helix 48
AF3
D
139 153Right-handed alpha
Helix 49
AF4
D
158 162Right-handed 310
Helix 50
AF5
D
182 202Right-handed alpha
Helix 51
AF6
D
217 223Right-handed alpha
Helix 52
AF7
D
233 237Right-handed 310
Helix 53
AF8
D
238 254Right-handed alpha
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There are 4 sheets in PDB entry 11EF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
37 42parallel
Strand 3
A
61 64parallel
Strand 4
A
91 94parallel
Strand 5
A
123 128parallel
Strand 6
A
165 168parallel
Strand 7
A
207 209parallel
Strand 8
A
229 232parallel
Strand 9
A
4 9parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
37 42parallel
Strand 3
B
61 64parallel
Strand 4
B
91 94parallel
Strand 5
B
123 129parallel
Strand 6
B
165 169parallel
Strand 7
B
207 209parallel
Strand 8
B
229 232parallel
Strand 9
B
4 9parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 9first strand
Strand 2
C
37 42parallel
Strand 3
C
61 64parallel
Strand 4
C
91 94parallel
Strand 5
C
123 129parallel
Strand 6
C
165 169parallel
Strand 7
C
207 209parallel
Strand 8
C
229 232parallel
Strand 9
C
4 9parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 9first strand
Strand 2
D
37 42parallel
Strand 3
D
61 64parallel
Strand 4
D
91 94parallel
Strand 5
D
123 128parallel
Strand 6
D
165 168parallel
Strand 7
D
207 209parallel
Strand 8
D
229 232parallel
Strand 9
D
4 9parallel
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