Analysis of interatomic Contacts of Structural Units in PDB entry:
11GK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11GK entry

There are 3 chains in PDB entry 11GK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 410ALA 859
B
 U 1 G 18
C
 C 4 A 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 11GK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
463 482Right-handed alpha
Helix 2
AA2
A
500 512Right-handed alpha
Helix 3
AA3
A
526 538Right-handed alpha
Helix 4
AA4
A
549 554Right-handed alpha
Helix 5
AA5
A
556 571Right-handed alpha
Helix 6
AA6
A
641 658Right-handed alpha
Helix 7
AA7
A
672 674Right-handed 310
Helix 8
AA8
A
675 695Right-handed alpha
Helix 9
AA9
A
775 789Right-handed alpha
Helix 10
AB1
A
800 817Right-handed alpha
Helix 11
AB2
A
839 845Right-handed alpha
Helix 12
AB3
A
849 854Right-handed alpha
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There are 4 sheets in PDB entry 11GK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
734 735anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 419anti-parallel
Strand 3
A
577 578anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
451 455parallel
Strand 3
A
517 522parallel
Strand 4
A
543 548parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 631first strand
Strand 2
A
611 617anti-parallel
Strand 3
A
591 599anti-parallel
Strand 4
A
663 668parallel
Strand 5
A
701 709parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
747 750anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il