Analysis of interatomic Contacts of Structural Units in PDB entry:
11GN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11GN entry

There are 4 chains in PDB entry 11GN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 151GLN 334
B
 GLY 151GLN 334
D
 GLY 151GLU 336
E
 GLY 151ILE 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 11GN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 165Right-handed alpha
Helix 2
AA2
A
166 171Right-handed alpha
Helix 3
AA3
A
173 185Right-handed alpha
Helix 4
AA4
A
210 214Right-handed 310
Helix 5
AA5
A
262 273Right-handed alpha
Helix 6
AA6
A
279 300Right-handed alpha
Helix 7
AA7
A
304 306Right-handed 310
Helix 8
AA8
A
323 333Right-handed alpha
Helix 9
AA9
B
153 165Right-handed alpha
Helix 10
AB1
B
166 185Right-handed alpha
Helix 11
AB2
B
191 195Right-handed 310
Helix 12
AB3
B
210 214Right-handed 310
Helix 13
AB4
B
262 273Right-handed alpha
Helix 14
AB5
B
274 277Right-handed 310
Helix 15
AB6
B
279 300Right-handed alpha
Helix 16
AB7
B
303 307Right-handed alpha
Helix 17
AB8
B
323 333Right-handed alpha
Helix 18
AB9
D
153 165Right-handed alpha
Helix 19
AC1
D
166 171Right-handed alpha
Helix 20
AC2
D
173 185Right-handed alpha
Helix 21
AC3
D
210 214Right-handed 310
Helix 22
AC4
D
262 273Right-handed alpha
Helix 23
AC5
D
274 277Right-handed 310
Helix 24
AC6
D
279 300Right-handed alpha
Helix 25
AC7
D
301 306Right-handed alpha
Helix 26
AC8
D
323 333Right-handed alpha
Helix 27
AC9
E
153 165Right-handed alpha
Helix 28
AD1
E
166 185Right-handed alpha
Helix 29
AD2
E
191 195Right-handed 310
Helix 30
AD3
E
262 273Right-handed alpha
Helix 31
AD4
E
274 277Right-handed 310
Helix 32
AD5
E
279 300Right-handed alpha
Helix 33
AD6
E
301 305Right-handed 310
Helix 34
AD7
E
323 333Right-handed alpha
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There are 8 sheets in PDB entry 11GN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 223first strand
Strand 2
A
242 246anti-parallel
Strand 3
A
254 260anti-parallel
Strand 4
A
197 202parallel
Strand 5
A
308 313parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 231first strand
Strand 2
A
234 239anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 223first strand
Strand 2
B
242 248anti-parallel
Strand 3
B
251 260anti-parallel
Strand 4
B
197 202parallel
Strand 5
B
308 313parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 231first strand
Strand 2
B
234 239anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
218 223first strand
Strand 2
D
242 247anti-parallel
Strand 3
D
252 260anti-parallel
Strand 4
D
197 202parallel
Strand 5
D
308 313parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
227 231first strand
Strand 2
D
234 239anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
218 223first strand
Strand 2
E
242 248anti-parallel
Strand 3
E
251 260anti-parallel
Strand 4
E
197 202parallel
Strand 5
E
308 313parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
227 231first strand
Strand 2
E
234 239anti-parallel
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