Analysis of interatomic Contacts of Structural Units in PDB entry:
11GX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11GX entry

There are 2 chains in PDB entry 11GX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 620
B
 C 701 T 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 11GX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
55 60Right-handed 310
Helix 4
AA4
A
81 95Right-handed alpha
Helix 5
AA5
A
105 119Right-handed alpha
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
138 148Right-handed alpha
Helix 8
AA8
A
155 187Right-handed alpha
Helix 9
AA9
A
198 216Right-handed alpha
Helix 10
AB1
A
258 267Right-handed alpha
Helix 11
AB2
A
293 306Right-handed alpha
Helix 12
AB3
A
308 322Right-handed alpha
Helix 13
AB4
A
337 342Right-handed 310
Helix 14
AB5
A
343 355Right-handed alpha
Helix 15
AB6
A
374 378Right-handed 310
Helix 16
AB7
A
396 413Right-handed alpha
Helix 17
AB8
A
444 450Right-handed 310
Helix 18
AB9
A
451 456Right-handed alpha
Helix 19
AC1
A
457 459Right-handed 310
Helix 20
AC2
A
492 502Right-handed alpha
Helix 21
AC3
A
503 507Right-handed 310
Helix 22
AC4
A
509 519Right-handed alpha
Helix 23
AC5
A
527 538Right-handed alpha
Helix 24
AC6
A
551 561Right-handed alpha
Helix 25
AC7
A
562 567Right-handed alpha
Helix 26
AC8
A
568 583Right-handed alpha
Helix 27
AC9
A
587 608Right-handed alpha
Helix 28
AD1
A
610 615Right-handed 310
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There are 4 sheets in PDB entry 11GX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
36 40anti-parallel
Strand 4
A
2 6parallel
Strand 5
A
97 101parallel
Strand 6
A
130 131parallel
Strand 7
A
150 151anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
75 77anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
472 481anti-parallel
Strand 3
A
223 229anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
433 443anti-parallel
Strand 6
A
418 426anti-parallel
Strand 7
A
280 286anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
547 550anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il