Analysis of interatomic Contacts of Structural Units in PDB entry:
11HM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11HM entry

There are 3 chains in PDB entry 11HM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 CYS 336ALA 520
D
 GLN 1SER 120
E
 GLU 1ARG 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 11HM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
338 343Right-handed alpha
Helix 2
AA2
B
349 353Right-handed 310
Helix 3
AA3
B
365 371Right-handed alpha
Helix 4
AA4
B
383 387Right-handed 310
Helix 5
AA5
B
406 410Right-handed 310
Helix 6
AA6
B
416 422Right-handed alpha
Helix 7
AA7
B
438 443Right-handed alpha
Helix 8
AA8
D
63 66Right-handed 310
Helix 9
AA9
D
88 92Right-handed 310
Helix 10
AB1
D
101 106Right-handed alpha
Helix 11
AB2
E
79 83Right-handed 310
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There are 6 sheets in PDB entry 11HM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 379anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
70 74anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
115 119parallel
Strand 3
D
93 98anti-parallel
Strand 4
D
35 40anti-parallel
Strand 5
D
47 52anti-parallel
Strand 6
D
60 61anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 5first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
70 75anti-parallel
Strand 4
E
62 67anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
102 105parallel
Strand 3
E
85 90anti-parallel
Strand 4
E
33 38anti-parallel
Strand 5
E
45 48anti-parallel
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