Analysis of interatomic Contacts of Structural Units in PDB entry:
11HR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11HR entry

There are 3 chains in PDB entry 11HR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 495
B
 A 2 C 233
D
 T 1 T 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 11HR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
88 108Right-handed alpha
Helix 3
AA3
A
109 121Right-handed alpha
Helix 4
AA4
A
163 182Right-handed alpha
Helix 5
AA5
A
194 200Right-handed alpha
Helix 6
AA6
A
222 231Right-handed alpha
Helix 7
AA7
A
257 261Right-handed 310
Helix 8
AA8
A
265 275Right-handed alpha
Helix 9
AA9
A
275 314Right-handed alpha
Helix 10
AB1
A
323 334Right-handed alpha
Helix 11
AB2
A
338 340Right-handed 310
Helix 12
AB3
A
341 350Right-handed alpha
Helix 13
AB4
A
408 415Right-handed alpha
Helix 14
AB5
A
417 424Right-handed alpha
Helix 15
AB6
A
461 465Right-handed 310
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There are 6 sheets in PDB entry 11HR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
41 44parallel
Strand 3
A
32 36anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
186 193parallel
Strand 3
A
55 60parallel
Strand 4
A
65 72anti-parallel
Strand 5
A
77 84anti-parallel
Strand 6
A
365 368parallel
Strand 7
A
492 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
140 143anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
432 433anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
386 389anti-parallel
Strand 3
A
425 427anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
468 471anti-parallel
Strand 3
A
452 459anti-parallel
Strand 4
A
444 446anti-parallel
Strand 5
A
483 486anti-parallel
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