Analysis of interatomic Contacts of Structural Units in PDB entry:
11KB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11KB entry

There are 2 chains in PDB entry 11KB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 620
B
 T 711 G 715
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 11KB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
55 60Right-handed 310
Helix 4
AA4
A
62 66Right-handed 310
Helix 5
AA5
A
78 95Right-handed alpha
Helix 6
AA6
A
105 119Right-handed alpha
Helix 7
AA7
A
122 127Right-handed alpha
Helix 8
AA8
A
138 147Right-handed alpha
Helix 9
AA9
A
158 187Right-handed alpha
Helix 10
AB1
A
198 215Right-handed alpha
Helix 11
AB2
A
243 250Right-handed 310
Helix 12
AB3
A
258 270Right-handed alpha
Helix 13
AB4
A
293 306Right-handed alpha
Helix 14
AB5
A
308 322Right-handed alpha
Helix 15
AB6
A
337 342Right-handed 310
Helix 16
AB7
A
343 355Right-handed alpha
Helix 17
AB8
A
374 378Right-handed 310
Helix 18
AB9
A
396 413Right-handed alpha
Helix 19
AC1
A
444 450Right-handed 310
Helix 20
AC2
A
451 457Right-handed alpha
Helix 21
AC3
A
492 502Right-handed alpha
Helix 22
AC4
A
503 507Right-handed 310
Helix 23
AC5
A
509 519Right-handed alpha
Helix 24
AC6
A
527 538Right-handed alpha
Helix 25
AC7
A
551 561Right-handed alpha
Helix 26
AC8
A
562 567Right-handed alpha
Helix 27
AC9
A
568 583Right-handed alpha
Helix 28
AD1
A
587 608Right-handed alpha
Helix 29
AD2
A
609 615Right-handed 310
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There are 3 sheets in PDB entry 11KB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
36 40anti-parallel
Strand 4
A
2 6parallel
Strand 5
A
97 101parallel
Strand 6
A
130 131parallel
Strand 7
A
150 151anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 229first strand
Strand 2
A
235 241anti-parallel
Strand 3
A
432 443anti-parallel
Strand 4
A
418 429anti-parallel
Strand 5
A
273 286anti-parallel
Strand 6
A
472 484anti-parallel
Strand 7
A
220 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
547 550anti-parallel
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