Analysis of interatomic Contacts of Structural Units in PDB entry:
11KM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11KM entry

There is 1 chain in PDB entry 11KM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6LYS 661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 11KM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
31 45Right-handed alpha
Helix 3
AA3
A
45 58Right-handed alpha
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
92 99Right-handed alpha
Helix 6
AA6
A
120 137Right-handed alpha
Helix 7
AA7
A
152 165Right-handed alpha
Helix 8
AA8
A
177 189Right-handed alpha
Helix 9
AA9
A
208 216Right-handed alpha
Helix 10
AB1
A
246 250Right-handed alpha
Helix 11
AB2
A
287 301Right-handed alpha
Helix 12
AB3
A
318 326Right-handed alpha
Helix 13
AB4
A
326 333Right-handed alpha
Helix 14
AB5
A
349 359Right-handed alpha
Helix 15
AB6
A
366 377Right-handed alpha
Helix 16
AB7
A
399 409Right-handed alpha
Helix 17
AB8
A
491 499Right-handed alpha
Helix 18
AB9
A
539 549Right-handed alpha
Helix 19
AC1
A
582 597Right-handed alpha
Helix 20
AC2
A
620 629Right-handed alpha
Helix 21
AC3
A
647 661Right-handed alpha
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There are 7 sheets in PDB entry 11KM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
335 339parallel
Strand 4
A
309 312parallel
Strand 5
A
362 364parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
224 228parallel
Strand 3
A
192 196parallel
Strand 4
A
144 148parallel
Strand 5
A
168 171parallel
Strand 6
A
269 273parallel
Strand 7
A
281 285anti-parallel
Strand 8
A
486 487anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
204 205anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 393first strand
Strand 2
A
416 419parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
470 476anti-parallel
Strand 3
A
506 514anti-parallel
Strand 4
A
520 525anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 532first strand
Strand 2
A
535 538anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 560first strand
Strand 2
A
568 573anti-parallel
Strand 3
A
605 608parallel
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