Analysis of interatomic Contacts of Structural Units in PDB entry:
11KP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11KP entry

There are 2 chains in PDB entry 11KP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0SER 171
B
 ASP 728ASN 837
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 11KP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
117 127Right-handed alpha
Helix 3
AA3
A
140 170Right-handed alpha
Helix 4
AA4
B
729 743Right-handed alpha
Helix 5
AA5
B
745 750Right-handed 310
Helix 6
AA6
B
751 761Right-handed alpha
Helix 7
AA7
B
768 788Right-handed alpha
Helix 8
AA8
B
789 799Right-handed alpha
Helix 9
AA9
B
799 809Right-handed alpha
Helix 10
AB1
B
813 831Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 11KP.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
91 95anti-parallel
Strand 3
A
64 75anti-parallel
Strand 4
A
78 84anti-parallel
Strand 5
A
44 50parallel
Strand 6
A
34 39anti-parallel
Strand 7
A
14 29anti-parallel
Strand 8
A
64 75anti-parallel
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