Analysis of interatomic Contacts of Structural Units in PDB entry:
11LP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11LP entry

There are 15 chains in PDB entry 11LP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	SER 2	LEU 110
M	GLU 2	VAL 119
G	GLN 2	SER 123
B	LYS 1	PRO 402
D	SER 2	LEU 110
H	SER 2	LEU 110
C	LYS 1	PRO 402
A	LYS 1	PRO 402
I	GLN 2	SER 123
E	GLN 2	SER 123
K	GLU 2	VAL 119
O	GLU 2	VAL 119
L	ILE 2	ILE 106
J	ILE 2	ILE 107
N	ILE 2	ILE 106

There are 39 helices in PDB entry 11LP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	88	92	Right-handed 310
Helix 2	AA2	G	87	91	Right-handed 310
Helix 3	AA3	B	18	22	Right-handed 310
Helix 4	AA4	B	90	104	Right-handed alpha
Helix 5	AA5	B	106	113	Right-handed alpha
Helix 6	AA6	B	154	158	Right-handed 310
Helix 7	AA7	B	273	294	Right-handed alpha
Helix 8	AA8	B	298	304	Right-handed alpha
Helix 9	AA9	B	334	339	Right-handed alpha
Helix 10	AB1	B	373	380	Right-handed alpha
Helix 11	AB2	B	385	388	Right-handed 310
Helix 12	AB3	C	18	22	Right-handed 310
Helix 13	AB4	C	90	104	Right-handed alpha
Helix 14	AB5	C	106	113	Right-handed alpha
Helix 15	AB6	C	154	158	Right-handed 310
Helix 16	AB7	C	273	294	Right-handed alpha
Helix 17	AB8	C	298	304	Right-handed alpha
Helix 18	AB9	C	334	339	Right-handed alpha
Helix 19	AC1	C	373	380	Right-handed alpha
Helix 20	AC2	C	385	388	Right-handed 310
Helix 21	AC3	A	18	22	Right-handed 310
Helix 22	AC4	A	90	104	Right-handed alpha
Helix 23	AC5	A	106	113	Right-handed alpha
Helix 24	AC6	A	154	158	Right-handed 310
Helix 25	AC7	A	273	294	Right-handed alpha
Helix 26	AC8	A	298	304	Right-handed alpha
Helix 27	AC9	A	334	339	Right-handed alpha
Helix 28	AD1	A	373	380	Right-handed alpha
Helix 29	AD2	A	385	388	Right-handed 310
Helix 30	AD3	I	87	91	Right-handed 310
Helix 31	AD4	E	87	91	Right-handed 310
Helix 32	AD5	K	88	92	Right-handed 310
Helix 33	AD6	O	88	92	Right-handed 310
Helix 34	AD7	L	29	33	Right-handed 310
Helix 35	AD8	L	79	84	Right-handed 310
Helix 36	AD9	J	29	33	Right-handed 310
Helix 37	AE1	J	79	84	Right-handed 310
Helix 38	AE2	N	29	33	Right-handed 310
Helix 39	AE3	N	79	84	Right-handed 310

There are 54 sheets in PDB entry 11LP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	71	76	anti-parallel
Strand 4	F	64	67	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	106	109	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	49	first strand
Strand 2	F	34	39	anti-parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	98	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	26	anti-parallel
Strand 3	M	79	84	anti-parallel
Strand 4	M	69	74	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	115	118	parallel
Strand 3	M	94	100	anti-parallel
Strand 4	M	35	40	anti-parallel
Strand 5	M	46	52	anti-parallel
Strand 6	M	59	61	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	115	118	parallel
Strand 3	M	94	100	anti-parallel
Strand 4	M	108	111	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	8	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	118	122	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	47	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	11	first strand
Strand 2	B	321	332	anti-parallel
Strand 3	B	15	16	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	11	first strand
Strand 2	B	321	332	anti-parallel
Strand 3	B	311	318	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	205	210	anti-parallel
Strand 3	B	192	202	anti-parallel
Strand 4	B	40	46	anti-parallel
Strand 5	B	240	242	anti-parallel
Strand 6	B	230	234	anti-parallel
Strand 7	B	223	227	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	54	66	anti-parallel
Strand 3	B	139	142	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	54	66	anti-parallel
Strand 3	B	176	180	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	390	392	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	350	351	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	371	372	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	64	67	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	109	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	64	67	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	106	109	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	49	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	86	93	anti-parallel
Strand 4	H	98	99	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	321	332	anti-parallel
Strand 3	C	15	16	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	321	332	anti-parallel
Strand 3	C	311	318	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	205	210	anti-parallel
Strand 3	C	192	202	anti-parallel
Strand 4	C	40	46	anti-parallel
Strand 5	C	240	242	anti-parallel
Strand 6	C	230	234	anti-parallel
Strand 7	C	223	227	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	54	66	anti-parallel
Strand 3	C	139	142	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	135	first strand
Strand 2	C	54	66	anti-parallel
Strand 3	C	176	180	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	390	392	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	347	first strand
Strand 2	C	350	351	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	371	372	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	321	332	anti-parallel
Strand 3	A	15	16	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	321	332	anti-parallel
Strand 3	A	311	318	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	205	210	anti-parallel
Strand 3	A	192	202	anti-parallel
Strand 4	A	40	46	anti-parallel
Strand 5	A	240	242	anti-parallel
Strand 6	A	230	234	anti-parallel
Strand 7	A	223	227	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	54	66	anti-parallel
Strand 3	A	139	142	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	135	first strand
Strand 2	A	54	66	anti-parallel
Strand 3	A	176	180	anti-parallel
Strand 4	A	169	170	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	390	392	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	350	351	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	371	372	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	8	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	118	122	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	34	40	anti-parallel
Strand 5	I	47	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	13	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	47	52	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	26	anti-parallel
Strand 3	K	79	84	anti-parallel
Strand 4	K	69	74	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	115	118	parallel
Strand 3	K	94	100	anti-parallel
Strand 4	K	35	40	anti-parallel
Strand 5	K	46	52	anti-parallel
Strand 6	K	59	61	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	115	118	parallel
Strand 3	K	94	100	anti-parallel
Strand 4	K	108	111	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	7	first strand
Strand 2	O	19	26	anti-parallel
Strand 3	O	79	84	anti-parallel
Strand 4	O	69	74	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	12	first strand
Strand 2	O	117	118	parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	61	first strand
Strand 2	O	46	52	anti-parallel
Strand 3	O	35	40	anti-parallel
Strand 4	O	94	100	anti-parallel
Strand 5	O	108	111	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	65	67	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	50	anti-parallel
Strand 3	L	34	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	97	98	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	24	first strand
Strand 2	J	70	75	anti-parallel
Strand 3	J	65	67	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	45	50	anti-parallel
Strand 3	J	34	38	anti-parallel
Strand 4	J	85	90	anti-parallel
Strand 5	J	97	98	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	65	67	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	45	50	anti-parallel
Strand 3	N	34	38	anti-parallel
Strand 4	N	85	90	anti-parallel
Strand 5	N	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11LP

Analysis of interatomic Contacts of Structural Units in PDB entry:
11LP