Analysis of interatomic Contacts of Structural Units in PDB entry:
11LR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11LR entry

There are 15 chains in PDB entry 11LR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLN 2	SER 123
A	LYS 1	PRO 402
H	SER 2	LEU 110
J	TYR 2	LEU 110
G	GLN 2	SER 123
I	GLN 2	SER 123
D	SER 2	LEU 110
F	SER 2	LEU 110
L	TYR 2	LEU 110
N	TYR 2	LEU 110
B	LYS 1	PRO 402
C	LYS 1	PRO 402
K	VAL 2	VAL 120
M	VAL 2	VAL 120
o	VAL 2	VAL 120

There are 44 helices in PDB entry 11LR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	87	92	Right-handed 310
Helix 2	AA2	A	18	22	Right-handed 310
Helix 3	AA3	A	90	104	Right-handed alpha
Helix 4	AA4	A	105	113	Right-handed alpha
Helix 5	AA5	A	154	158	Right-handed 310
Helix 6	AA6	A	263	269	Right-handed alpha
Helix 7	AA7	A	275	294	Right-handed alpha
Helix 8	AA8	A	298	302	Right-handed alpha
Helix 9	AA9	A	303	305	Right-handed 310
Helix 10	AB1	A	317	321	Right-handed 310
Helix 11	AB2	A	334	339	Right-handed alpha
Helix 12	AB3	A	373	381	Right-handed alpha
Helix 13	AB4	A	384	389	Right-handed alpha
Helix 14	AB5	H	25	30	Right-handed alpha
Helix 15	AB6	G	87	92	Right-handed 310
Helix 16	AB7	I	87	92	Right-handed 310
Helix 17	AB8	D	25	30	Right-handed alpha
Helix 18	AB9	F	25	30	Right-handed alpha
Helix 19	AC1	B	18	22	Right-handed 310
Helix 20	AC2	B	90	104	Right-handed alpha
Helix 21	AC3	B	105	113	Right-handed alpha
Helix 22	AC4	B	154	158	Right-handed 310
Helix 23	AC5	B	263	269	Right-handed alpha
Helix 24	AC6	B	275	294	Right-handed alpha
Helix 25	AC7	B	298	302	Right-handed alpha
Helix 26	AC8	B	303	305	Right-handed 310
Helix 27	AC9	B	317	321	Right-handed 310
Helix 28	AD1	B	334	339	Right-handed alpha
Helix 29	AD2	B	373	381	Right-handed alpha
Helix 30	AD3	B	384	389	Right-handed alpha
Helix 31	AD4	C	18	22	Right-handed 310
Helix 32	AD5	C	90	104	Right-handed alpha
Helix 33	AD6	C	105	113	Right-handed alpha
Helix 34	AD7	C	154	158	Right-handed 310
Helix 35	AD8	C	263	269	Right-handed alpha
Helix 36	AD9	C	275	294	Right-handed alpha
Helix 37	AE1	C	298	302	Right-handed alpha
Helix 38	AE2	C	303	305	Right-handed 310
Helix 39	AE3	C	317	321	Right-handed 310
Helix 40	AE4	C	334	339	Right-handed alpha
Helix 41	AE5	C	373	381	Right-handed alpha
Helix 42	AE6	C	384	389	Right-handed alpha
Helix 43	AE7	K	87	91	Right-handed 310
Helix 44	AE8	M	87	91	Right-handed 310

There are 63 sheets in PDB entry 11LR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	21	26	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	13	first strand
Strand 2	E	121	122	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	47	53	anti-parallel
Strand 3	E	34	40	anti-parallel
Strand 4	E	93	100	anti-parallel
Strand 5	E	110	114	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	323	332	anti-parallel
Strand 3	A	15	16	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	323	332	anti-parallel
Strand 3	A	311	316	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	205	210	anti-parallel
Strand 3	A	192	202	anti-parallel
Strand 4	A	37	46	anti-parallel
Strand 5	A	240	242	anti-parallel
Strand 6	A	230	234	anti-parallel
Strand 7	A	223	227	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	141	142	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	58	64	anti-parallel
Strand 3	A	132	135	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	58	64	anti-parallel
Strand 3	A	177	180	anti-parallel
Strand 4	A	169	170	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	390	392	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	350	351	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	371	372	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	63	67	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	106	109	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	49	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	86	93	anti-parallel
Strand 4	H	98	101	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	109	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	23	first strand
Strand 2	J	69	74	anti-parallel
Strand 3	J	61	66	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	44	47	first strand
Strand 2	J	33	37	anti-parallel
Strand 3	J	84	88	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	21	26	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	121	122	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	47	53	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	93	100	anti-parallel
Strand 5	G	110	114	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	8	first strand
Strand 2	I	21	26	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	121	122	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	47	53	anti-parallel
Strand 3	I	34	40	anti-parallel
Strand 4	I	93	100	anti-parallel
Strand 5	I	110	114	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	67	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	109	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	35	39	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	98	101	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	71	76	anti-parallel
Strand 4	F	63	67	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	106	109	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	49	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	98	101	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	107	109	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	69	74	anti-parallel
Strand 3	L	61	66	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	47	first strand
Strand 2	L	33	37	anti-parallel
Strand 3	L	84	88	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	107	109	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	23	first strand
Strand 2	N	69	74	anti-parallel
Strand 3	N	61	66	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	44	47	first strand
Strand 2	N	33	37	anti-parallel
Strand 3	N	84	88	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	11	first strand
Strand 2	B	323	332	anti-parallel
Strand 3	B	15	16	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	11	first strand
Strand 2	B	323	332	anti-parallel
Strand 3	B	311	316	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	205	210	anti-parallel
Strand 3	B	192	202	anti-parallel
Strand 4	B	37	46	anti-parallel
Strand 5	B	240	242	anti-parallel
Strand 6	B	230	234	anti-parallel
Strand 7	B	223	227	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	141	142	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	58	64	anti-parallel
Strand 3	B	132	135	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	58	64	anti-parallel
Strand 3	B	177	180	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	390	392	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	350	351	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	371	372	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	323	332	anti-parallel
Strand 3	C	15	16	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	323	332	anti-parallel
Strand 3	C	311	316	anti-parallel

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There are 7 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	205	210	anti-parallel
Strand 3	C	192	202	anti-parallel
Strand 4	C	37	46	anti-parallel
Strand 5	C	240	242	anti-parallel
Strand 6	C	230	234	anti-parallel
Strand 7	C	223	227	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	141	142	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	58	64	anti-parallel
Strand 3	C	132	135	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	58	64	anti-parallel
Strand 3	C	177	180	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	390	392	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	347	first strand
Strand 2	C	350	351	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	371	372	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	60	first strand
Strand 2	K	45	51	anti-parallel
Strand 3	K	34	39	anti-parallel
Strand 4	K	92	99	anti-parallel
Strand 5	K	109	112	anti-parallel

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There are 5 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	60	first strand
Strand 2	K	45	51	anti-parallel
Strand 3	K	34	39	anti-parallel
Strand 4	K	92	99	anti-parallel
Strand 5	K	116	118	anti-parallel

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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 5 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	59	60	first strand
Strand 2	M	45	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	92	99	anti-parallel
Strand 5	M	109	112	anti-parallel

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There are 5 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	59	60	first strand
Strand 2	M	45	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	92	99	anti-parallel
Strand 5	M	116	118	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	3	6	first strand
Strand 2	o	18	25	anti-parallel
Strand 3	o	78	83	anti-parallel
Strand 4	o	68	73	anti-parallel

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There are 5 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	59	60	first strand
Strand 2	o	45	51	anti-parallel
Strand 3	o	34	39	anti-parallel
Strand 4	o	92	99	anti-parallel
Strand 5	o	109	112	anti-parallel

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There are 5 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	59	60	first strand
Strand 2	o	45	51	anti-parallel
Strand 3	o	34	39	anti-parallel
Strand 4	o	92	99	anti-parallel
Strand 5	o	116	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11LR

Analysis of interatomic Contacts of Structural Units in PDB entry:
11LR