Analysis of interatomic Contacts of Structural Units in PDB entry:
11MP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11MP entry

There are 5 chains in PDB entry 11MP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 35	GLY 495
E	MET 1	SER 138
A	MET 1	GLN 248
B	MET 1	GLN 248
D	MET 1	ARG 423

There are 47 helices in PDB entry 11MP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	39	50	Right-handed alpha
Helix 2	AA2	C	53	70	Right-handed alpha
Helix 3	AA3	C	84	88	Right-handed 310
Helix 4	AA4	C	154	161	Right-handed alpha
Helix 5	AA5	C	169	176	Right-handed alpha
Helix 6	AA6	C	176	184	Right-handed alpha
Helix 7	AA7	C	193	203	Right-handed alpha
Helix 8	AA8	C	290	294	Right-handed 310
Helix 9	AA9	C	441	451	Right-handed alpha
Helix 10	AB1	C	454	467	Right-handed alpha
Helix 11	AB2	C	467	472	Right-handed alpha
Helix 12	AB3	C	475	495	Right-handed alpha
Helix 13	AB4	E	6	17	Right-handed alpha
Helix 14	AB5	E	19	33	Right-handed alpha
Helix 15	AB6	E	75	89	Right-handed alpha
Helix 16	AB7	E	93	99	Right-handed alpha
Helix 17	AB8	E	102	109	Right-handed alpha
Helix 18	AB9	E	116	138	Right-handed alpha
Helix 19	AC1	A	39	49	Right-handed alpha
Helix 20	AC2	A	71	79	Right-handed alpha
Helix 21	AC3	A	94	110	Right-handed alpha
Helix 22	AC4	A	116	131	Right-handed alpha
Helix 23	AC5	A	134	139	Right-handed 310
Helix 24	AC6	A	147	163	Right-handed alpha
Helix 25	AC7	A	177	192	Right-handed alpha
Helix 26	AC8	A	205	211	Right-handed alpha
Helix 27	AC9	A	230	240	Right-handed alpha
Helix 28	AD1	A	241	247	Right-handed alpha
Helix 29	AD2	B	39	48	Right-handed alpha
Helix 30	AD3	B	71	78	Right-handed alpha
Helix 31	AD4	B	95	111	Right-handed alpha
Helix 32	AD5	B	116	131	Right-handed alpha
Helix 33	AD6	B	134	138	Right-handed 310
Helix 34	AD7	B	147	163	Right-handed alpha
Helix 35	AD8	B	177	192	Right-handed alpha
Helix 36	AD9	B	206	210	Right-handed 310
Helix 37	AE1	B	230	240	Right-handed alpha
Helix 38	AE2	B	241	248	Right-handed alpha
Helix 39	AE3	D	8	21	Right-handed alpha
Helix 40	AE4	D	26	40	Right-handed alpha
Helix 41	AE5	D	46	50	Right-handed 310
Helix 42	AE6	D	54	59	Right-handed alpha
Helix 43	AE7	D	70	77	Right-handed alpha
Helix 44	AE8	D	124	134	Right-handed alpha
Helix 45	AE9	D	368	377	Right-handed alpha
Helix 46	AF1	D	381	399	Right-handed alpha
Helix 47	AF2	D	403	418	Right-handed alpha

There are 12 sheets in PDB entry 11MP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	205	209	anti-parallel
Strand 3	C	236	241	parallel
Strand 4	C	268	273	parallel
Strand 5	C	302	303	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	205	209	anti-parallel
Strand 3	C	236	241	parallel
Strand 4	C	268	273	parallel
Strand 5	C	306	307	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	246	253	parallel
Strand 3	C	277	284	parallel

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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	321	first strand
Strand 2	C	343	349	parallel
Strand 3	C	372	378	parallel
Strand 4	C	403	409	parallel
Strand 5	C	431	437	parallel
Strand 6	D	356	365	anti-parallel
Strand 7	D	326	336	parallel
Strand 8	D	296	305	parallel
Strand 9	D	267	274	parallel
Strand 10	D	240	247	parallel
Strand 11	D	212	219	parallel
Strand 12	D	182	191	parallel
Strand 13	D	152	158	parallel
Strand 14	D	84	89	parallel
Strand 15	D	92	93	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	334	first strand
Strand 2	C	360	363	parallel
Strand 3	C	389	392	parallel
Strand 4	C	421	424	parallel
Strand 5	D	342	351	anti-parallel
Strand 6	D	310	319	parallel
Strand 7	D	281	290	parallel
Strand 8	D	252	261	parallel
Strand 9	D	226	235	parallel
Strand 10	D	197	207	parallel
Strand 11	D	165	177	parallel
Strand 12	D	61	63	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	383	387	parallel
Strand 3	C	415	418	parallel
Strand 4	D	342	351	anti-parallel
Strand 5	D	310	319	parallel
Strand 6	D	281	290	parallel
Strand 7	D	252	261	parallel
Strand 8	D	226	235	parallel
Strand 9	D	197	207	parallel
Strand 10	D	165	177	parallel
Strand 11	D	137	142	parallel
Strand 12	D	107	111	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	58	first strand
Strand 2	E	70	71	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	24	first strand
Strand 2	A	2	11	anti-parallel
Strand 3	A	53	62	anti-parallel
Strand 4	A	65	66	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	166	170	parallel
Strand 3	A	197	202	parallel
Strand 4	A	29	33	parallel
Strand 5	A	215	220	parallel
Strand 6	A	223	228	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	24	first strand
Strand 2	B	2	11	anti-parallel
Strand 3	B	53	62	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	166	170	parallel
Strand 3	B	197	202	parallel
Strand 4	B	29	33	parallel
Strand 5	B	215	220	parallel
Strand 6	B	223	228	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	94	first strand
Strand 2	B	141	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11MP

Analysis of interatomic Contacts of Structural Units in PDB entry:
11MP