Analysis of interatomic Contacts of Structural Units in PDB entry:
11MT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11MT entry

There are 3 chains in PDB entry 11MT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 22	GLN 517
B	ASN 22	GLN 517
C	ASN 22	GLN 517

There are 24 helices in PDB entry 11MT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	88	Right-handed alpha
Helix 2	AA2	A	89	96	Right-handed 310
Helix 3	AA3	A	120	132	Right-handed alpha
Helix 4	AA4	A	203	212	Right-handed alpha
Helix 5	AA5	A	383	399	Right-handed alpha
Helix 6	AA6	A	420	472	Right-handed alpha
Helix 7	AA7	A	490	499	Right-handed alpha
Helix 8	AA8	A	507	516	Right-handed alpha
Helix 9	AA9	B	81	88	Right-handed alpha
Helix 10	AB1	B	89	96	Right-handed 310
Helix 11	AB2	B	120	132	Right-handed alpha
Helix 12	AB3	B	203	212	Right-handed alpha
Helix 13	AB4	B	382	401	Right-handed alpha
Helix 14	AB5	B	420	472	Right-handed alpha
Helix 15	AB6	B	490	499	Right-handed alpha
Helix 16	AB7	B	507	516	Right-handed alpha
Helix 17	AB8	C	81	88	Right-handed alpha
Helix 18	AB9	C	89	96	Right-handed 310
Helix 19	AC1	C	120	132	Right-handed alpha
Helix 20	AC2	C	203	212	Right-handed alpha
Helix 21	AC3	C	383	399	Right-handed alpha
Helix 22	AC4	C	420	472	Right-handed alpha
Helix 23	AC5	C	490	499	Right-handed alpha
Helix 24	AC6	C	507	516	Right-handed alpha

There are 36 sheets in PDB entry 11MT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	382	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	27	33	anti-parallel
Strand 4	A	482	485	anti-parallel
Strand 5	A	475	477	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	50	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	331	333	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	310	311	parallel
Strand 3	A	323	324	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	290	291	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	102	105	parallel
Strand 3	A	282	285	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	245	253	parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	272	275	anti-parallel
Strand 5	A	136	138	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	245	253	parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	267	270	anti-parallel
Strand 5	A	167	169	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	171	172	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	156	first strand
Strand 2	A	161	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	258	263	anti-parallel
Strand 3	A	218	221	anti-parallel
Strand 4	A	226	229	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	297	299	anti-parallel
Strand 3	A	318	321	anti-parallel
Strand 4	A	405	407	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	27	33	anti-parallel
Strand 4	B	482	485	anti-parallel
Strand 5	B	475	477	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	50	52	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	331	333	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	310	311	parallel
Strand 3	B	323	324	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	290	291	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	102	105	parallel
Strand 3	B	282	285	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	245	253	parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	272	275	anti-parallel
Strand 5	B	136	138	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	245	253	parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	267	270	anti-parallel
Strand 5	B	167	169	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	171	172	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	161	162	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	258	263	anti-parallel
Strand 3	B	218	221	anti-parallel
Strand 4	B	226	229	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	304	first strand
Strand 2	B	297	299	anti-parallel
Strand 3	B	318	321	anti-parallel
Strand 4	B	405	407	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	382	first strand
Strand 2	C	367	372	anti-parallel
Strand 3	C	27	33	anti-parallel
Strand 4	C	482	485	anti-parallel
Strand 5	C	475	477	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	50	52	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	331	333	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	310	311	parallel
Strand 3	C	323	324	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	290	291	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	102	105	parallel
Strand 3	C	282	285	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	245	253	parallel
Strand 3	C	192	200	anti-parallel
Strand 4	C	272	275	anti-parallel
Strand 5	C	136	138	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	245	253	parallel
Strand 3	C	192	200	anti-parallel
Strand 4	C	267	270	anti-parallel
Strand 5	C	167	169	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	171	172	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	156	first strand
Strand 2	C	161	162	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	185	first strand
Strand 2	C	258	263	anti-parallel
Strand 3	C	218	221	anti-parallel
Strand 4	C	226	229	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	304	first strand
Strand 2	C	297	299	anti-parallel
Strand 3	C	318	321	anti-parallel
Strand 4	C	405	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11MT

Analysis of interatomic Contacts of Structural Units in PDB entry:
11MT