Analysis of interatomic Contacts of Structural Units in PDB entry:
11MY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11MY entry

There are 7 chains in PDB entry 11MY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 82	THR 88
B	MET 1	GLN 456
C	GLY 2	GLY 526
D	MET 1	GLN 456
E	MET 1	ILE 120
F	MET 1	GLY 101
J	MET 1	GLY 104

There are 63 helices in PDB entry 11MY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	88	Right-handed 310
Helix 2	AA2	B	24	34	Right-handed alpha
Helix 3	AA3	B	45	61	Right-handed alpha
Helix 4	AA4	B	145	161	Right-handed alpha
Helix 5	AA5	B	179	194	Right-handed alpha
Helix 6	AA6	B	224	230	Right-handed alpha
Helix 7	AA7	B	241	257	Right-handed alpha
Helix 8	AA8	B	269	284	Right-handed alpha
Helix 9	AA9	B	288	305	Right-handed alpha
Helix 10	AB1	B	306	309	Right-handed 310
Helix 11	AB2	B	319	334	Right-handed alpha
Helix 12	AB3	B	346	357	Right-handed alpha
Helix 13	AB4	B	371	382	Right-handed alpha
Helix 14	AB5	B	390	392	Right-handed 310
Helix 15	AB6	B	393	401	Right-handed alpha
Helix 16	AB7	B	416	420	Right-handed 310
Helix 17	AB8	B	423	447	Right-handed alpha
Helix 18	AB9	B	448	452	Right-handed 310
Helix 19	AC1	C	5	17	Right-handed alpha
Helix 20	AC2	C	20	28	Right-handed alpha
Helix 21	AC3	C	58	65	Right-handed alpha
Helix 22	AC4	C	115	121	Right-handed alpha
Helix 23	AC5	C	125	137	Right-handed alpha
Helix 24	AC6	C	148	155	Right-handed alpha
Helix 25	AC7	C	157	169	Right-handed alpha
Helix 26	AC8	C	186	200	Right-handed alpha
Helix 27	AC9	C	225	238	Right-handed alpha
Helix 28	AD1	C	253	257	Right-handed 310
Helix 29	AD2	C	272	282	Right-handed alpha
Helix 30	AD3	C	293	308	Right-handed alpha
Helix 31	AD4	C	310	337	Right-handed alpha
Helix 32	AD5	C	356	364	Right-handed alpha
Helix 33	AD6	C	377	382	Right-handed alpha
Helix 34	AD7	C	383	386	Right-handed 310
Helix 35	AD8	C	416	421	Right-handed alpha
Helix 36	AD9	C	454	459	Right-handed alpha
Helix 37	AE1	C	470	478	Right-handed alpha
Helix 38	AE2	C	486	490	Right-handed 310
Helix 39	AE3	C	498	504	Right-handed alpha
Helix 40	AE4	C	506	511	Right-handed alpha
Helix 41	AE5	D	24	33	Right-handed alpha
Helix 42	AE6	D	47	60	Right-handed alpha
Helix 43	AE7	D	80	96	Right-handed alpha
Helix 44	AE8	D	105	112	Right-handed alpha
Helix 45	AE9	D	147	158	Right-handed alpha
Helix 46	AF1	D	182	194	Right-handed alpha
Helix 47	AF2	D	245	256	Right-handed alpha
Helix 48	AF3	D	269	283	Right-handed alpha
Helix 49	AF4	D	288	305	Right-handed alpha
Helix 50	AF5	D	306	309	Right-handed 310
Helix 51	AF6	D	319	334	Right-handed alpha
Helix 52	AF7	D	348	358	Right-handed alpha
Helix 53	AF8	D	376	381	Right-handed alpha
Helix 54	AF9	D	393	401	Right-handed alpha
Helix 55	AG1	D	426	447	Right-handed alpha
Helix 56	AG2	E	12	24	Right-handed alpha
Helix 57	AG3	E	42	46	Right-handed 310
Helix 58	AG4	E	74	77	Right-handed 310
Helix 59	AG5	E	78	90	Right-handed alpha
Helix 60	AG6	F	13	24	Right-handed alpha
Helix 61	AG7	F	65	75	Right-handed alpha
Helix 62	AG8	J	12	24	Right-handed alpha
Helix 63	AG9	J	62	77	Right-handed alpha

There are 13 sheets in PDB entry 11MY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	171	174	parallel
Strand 3	B	236	239	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	336	342	parallel
Strand 3	B	313	318	parallel
Strand 4	B	387	389	parallel
Strand 5	B	405	406	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	440	445	anti-parallel
Strand 3	C	371	372	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	75	78	parallel
Strand 3	C	142	146	parallel
Strand 4	C	172	176	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	241	244	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	464	465	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	39	43	parallel
Strand 3	D	100	104	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	174	first strand
Strand 2	D	236	239	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	336	339	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	35	first strand
Strand 2	E	64	73	anti-parallel
Strand 3	E	2	8	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	86	91	anti-parallel
Strand 3	J	94	96	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	34	first strand
Strand 2	F	53	55	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	33	first strand
Strand 2	J	54	61	anti-parallel
Strand 3	J	2	8	anti-parallel
Strand 4	J	85	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11MY

Analysis of interatomic Contacts of Structural Units in PDB entry:
11MY