Analysis of interatomic Contacts of Structural Units in PDB entry:
11NS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11NS entry

There are 2 chains in PDB entry 11NS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5VAL 162
B
 ARG 5VAL 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 11NS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 13Right-handed alpha
Helix 2
AA2
A
14 16Right-handed 310
Helix 3
AA3
A
46 52Right-handed alpha
Helix 4
AA4
A
53 58Right-handed 310
Helix 5
AA5
A
61 77Right-handed alpha
Helix 6
AA6
A
78 80Right-handed 310
Helix 7
AA7
A
82 87Right-handed alpha
Helix 8
AA8
A
89 98Right-handed alpha
Helix 9
AA9
A
105 117Right-handed alpha
Helix 10
AB1
B
7 13Right-handed alpha
Helix 11
AB2
B
14 16Right-handed 310
Helix 12
AB3
B
46 52Right-handed alpha
Helix 13
AB4
B
53 58Right-handed 310
Helix 14
AB5
B
61 77Right-handed alpha
Helix 15
AB6
B
78 80Right-handed 310
Helix 16
AB7
B
82 87Right-handed alpha
Helix 17
AB8
B
89 98Right-handed alpha
Helix 18
AB9
B
105 117Right-handed alpha
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There are 2 sheets in PDB entry 11NS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
130 137anti-parallel
Strand 4
A
120 124anti-parallel
Strand 5
A
147 151parallel
Strand 6
A
156 161anti-parallel
Strand 7
A
35 38anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
130 137anti-parallel
Strand 4
B
120 124anti-parallel
Strand 5
B
147 151parallel
Strand 6
B
156 161anti-parallel
Strand 7
B
35 38anti-parallel
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