Analysis of interatomic Contacts of Structural Units in PDB entry:
11OI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11OI entry

There are 6 chains in PDB entry 11OI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 289	VAL 912
E	LYS 621	VAL 912
F	PRO 633	LYS 906
D	THR 475	VAL 912
A	THR 475	VAL 912
B	GLY 289	VAL 912

There are 97 helices in PDB entry 11OI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	312	317	Right-handed 310
Helix 2	AA2	C	340	342	Right-handed 310
Helix 3	AA3	C	349	354	Right-handed alpha
Helix 4	AA4	C	356	362	Right-handed alpha
Helix 5	AA5	C	362	381	Right-handed alpha
Helix 6	AA6	C	396	412	Right-handed alpha
Helix 7	AA7	C	419	423	Right-handed 310
Helix 8	AA8	C	474	485	Right-handed alpha
Helix 9	AA9	C	514	525	Right-handed alpha
Helix 10	AB1	C	559	567	Right-handed alpha
Helix 11	AB2	C	570	578	Right-handed alpha
Helix 12	AB3	C	600	611	Right-handed alpha
Helix 13	AB4	C	627	631	Right-handed 310
Helix 14	AB5	C	644	653	Right-handed alpha
Helix 15	AB6	C	666	677	Right-handed alpha
Helix 16	AB7	C	691	698	Right-handed alpha
Helix 17	AB8	C	728	742	Right-handed alpha
Helix 18	AB9	C	762	774	Right-handed alpha
Helix 19	AC1	C	783	785	Right-handed 310
Helix 20	AC2	C	814	819	Right-handed 310
Helix 21	AC3	C	860	868	Right-handed alpha
Helix 22	AC4	C	881	890	Right-handed alpha
Helix 23	AC5	C	894	903	Right-handed alpha
Helix 24	AC6	C	904	909	Right-handed 310
Helix 25	AC7	E	627	631	Right-handed 310
Helix 26	AC8	E	644	653	Right-handed alpha
Helix 27	AC9	E	666	677	Right-handed alpha
Helix 28	AD1	E	691	699	Right-handed alpha
Helix 29	AD2	E	728	742	Right-handed alpha
Helix 30	AD3	E	762	774	Right-handed alpha
Helix 31	AD4	E	783	785	Right-handed 310
Helix 32	AD5	E	814	819	Right-handed alpha
Helix 33	AD6	E	860	869	Right-handed alpha
Helix 34	AD7	E	881	890	Right-handed alpha
Helix 35	AD8	E	894	903	Right-handed alpha
Helix 36	AD9	E	904	909	Right-handed alpha
Helix 37	AE1	F	644	654	Right-handed alpha
Helix 38	AE2	F	730	742	Right-handed alpha
Helix 39	AE3	F	762	774	Right-handed alpha
Helix 40	AE4	F	783	785	Right-handed 310
Helix 41	AE5	F	894	903	Right-handed alpha
Helix 42	AE6	F	904	906	Right-handed 310
Helix 43	AE7	D	476	485	Right-handed alpha
Helix 44	AE8	D	489	493	Right-handed 310
Helix 45	AE9	D	514	524	Right-handed alpha
Helix 46	AF1	D	559	567	Right-handed alpha
Helix 47	AF2	D	570	578	Right-handed alpha
Helix 48	AF3	D	600	609	Right-handed alpha
Helix 49	AF4	D	644	653	Right-handed alpha
Helix 50	AF5	D	666	677	Right-handed alpha
Helix 51	AF6	D	691	699	Right-handed alpha
Helix 52	AF7	D	728	742	Right-handed alpha
Helix 53	AF8	D	762	774	Right-handed alpha
Helix 54	AF9	D	783	785	Right-handed 310
Helix 55	AG1	D	835	839	Right-handed 310
Helix 56	AG2	D	860	868	Right-handed alpha
Helix 57	AG3	D	881	890	Right-handed alpha
Helix 58	AG4	D	894	903	Right-handed alpha
Helix 59	AG5	D	904	909	Right-handed alpha
Helix 60	AG6	A	476	485	Right-handed alpha
Helix 61	AG7	A	489	493	Right-handed 310
Helix 62	AG8	A	514	524	Right-handed alpha
Helix 63	AG9	A	559	567	Right-handed alpha
Helix 64	AH1	A	570	578	Right-handed alpha
Helix 65	AH2	A	600	609	Right-handed alpha
Helix 66	AH3	A	644	653	Right-handed alpha
Helix 67	AH4	A	666	677	Right-handed alpha
Helix 68	AH5	A	691	699	Right-handed alpha
Helix 69	AH6	A	725	742	Right-handed alpha
Helix 70	AH7	A	762	774	Right-handed alpha
Helix 71	AH8	A	783	785	Right-handed 310
Helix 72	AH9	A	894	903	Right-handed alpha
Helix 73	AI1	A	904	909	Right-handed alpha
Helix 74	AI2	B	313	317	Right-handed 310
Helix 75	AI3	B	355	362	Right-handed alpha
Helix 76	AI4	B	362	381	Right-handed alpha
Helix 77	AI5	B	396	412	Right-handed alpha
Helix 78	AI6	B	418	423	Right-handed 310
Helix 79	AI7	B	474	485	Right-handed alpha
Helix 80	AI8	B	489	493	Right-handed 310
Helix 81	AI9	B	514	524	Right-handed alpha
Helix 82	AJ1	B	560	567	Right-handed alpha
Helix 83	AJ2	B	570	578	Right-handed alpha
Helix 84	AJ3	B	600	611	Right-handed alpha
Helix 85	AJ4	B	627	631	Right-handed 310
Helix 86	AJ5	B	644	653	Right-handed alpha
Helix 87	AJ6	B	666	677	Right-handed alpha
Helix 88	AJ7	B	691	698	Right-handed alpha
Helix 89	AJ8	B	725	727	Right-handed 310
Helix 90	AJ9	B	728	742	Right-handed alpha
Helix 91	AK1	B	762	774	Right-handed alpha
Helix 92	AK2	B	783	785	Right-handed 310
Helix 93	AK3	B	814	819	Right-handed alpha
Helix 94	AK4	B	860	868	Right-handed alpha
Helix 95	AK5	B	881	890	Right-handed alpha
Helix 96	AK6	B	894	903	Right-handed alpha
Helix 97	AK7	B	904	909	Right-handed 310

There are 14 sheets in PDB entry 11OI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	339	first strand
Strand 2	C	326	329	anti-parallel
Strand 3	C	306	310	anti-parallel
Strand 4	C	295	298	anti-parallel
Strand 5	C	344	345	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	791	794	anti-parallel
Strand 3	C	778	781	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	824	825	first strand
Strand 2	C	850	851	anti-parallel
Strand 3	C	856	857	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	657	663	first strand
Strand 2	E	634	639	parallel
Strand 3	E	703	706	parallel
Strand 4	E	752	758	parallel
Strand 5	E	791	796	anti-parallel
Strand 6	E	778	781	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	824	825	first strand
Strand 2	E	850	851	anti-parallel
Strand 3	E	856	857	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	657	663	first strand
Strand 2	F	634	639	parallel
Strand 3	F	703	706	parallel
Strand 4	F	752	758	parallel
Strand 5	F	791	796	anti-parallel
Strand 6	F	778	781	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	683	first strand
Strand 2	D	659	663	parallel
Strand 3	D	635	639	parallel
Strand 4	D	703	704	parallel
Strand 5	D	752	758	parallel
Strand 6	D	791	796	anti-parallel
Strand 7	D	778	781	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	824	825	first strand
Strand 2	D	850	852	anti-parallel
Strand 3	D	855	857	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	683	first strand
Strand 2	A	659	663	parallel
Strand 3	A	635	639	parallel
Strand 4	A	703	704	parallel
Strand 5	A	752	757	parallel
Strand 6	A	791	796	anti-parallel
Strand 7	A	778	781	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	298	first strand
Strand 2	B	306	310	anti-parallel
Strand 3	B	326	329	anti-parallel
Strand 4	B	336	339	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	548	first strand
Strand 2	B	557	559	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	657	659	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	754	758	first strand
Strand 2	B	791	796	anti-parallel
Strand 3	B	778	781	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	825	first strand
Strand 2	B	850	851	anti-parallel
Strand 3	B	856	857	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11OI

Analysis of interatomic Contacts of Structural Units in PDB entry:
11OI