Analysis of interatomic Contacts of Structural Units in PDB entry:
11QC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11QC entry

There are 2 chains in PDB entry 11QC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 122PHE 760
B
 LEU 122PHE 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 11QC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
123 136Right-handed alpha
Helix 2
AA2
A
139 147Right-handed alpha
Helix 3
AA3
A
159 176Right-handed alpha
Helix 4
AA4
A
239 245Right-handed alpha
Helix 5
AA5
A
263 274Right-handed alpha
Helix 6
AA6
A
316 320Right-handed 310
Helix 7
AA7
A
338 347Right-handed alpha
Helix 8
AA8
A
354 358Right-handed 310
Helix 9
AA9
A
419 439Right-handed alpha
Helix 10
AB1
A
455 459Right-handed 310
Helix 11
AB2
A
460 470Right-handed alpha
Helix 12
AB3
A
470 475Right-handed alpha
Helix 13
AB4
A
502 513Right-handed alpha
Helix 14
AB5
A
527 531Right-handed 310
Helix 15
AB6
A
540 547Right-handed alpha
Helix 16
AB7
A
572 580Right-handed alpha
Helix 17
AB8
A
582 604Right-handed alpha
Helix 18
AB9
A
612 626Right-handed alpha
Helix 19
AC1
A
628 635Right-handed alpha
Helix 20
AC2
A
639 663Right-handed alpha
Helix 21
AC3
A
667 684Right-handed alpha
Helix 22
AC4
A
708 717Right-handed alpha
Helix 23
AC5
A
718 722Right-handed 310
Helix 24
AC6
A
727 751Right-handed alpha
Helix 25
AC7
B
123 136Right-handed alpha
Helix 26
AC8
B
139 147Right-handed alpha
Helix 27
AC9
B
159 176Right-handed alpha
Helix 28
AD1
B
239 245Right-handed alpha
Helix 29
AD2
B
263 274Right-handed alpha
Helix 30
AD3
B
316 320Right-handed 310
Helix 31
AD4
B
338 347Right-handed alpha
Helix 32
AD5
B
354 358Right-handed 310
Helix 33
AD6
B
419 439Right-handed alpha
Helix 34
AD7
B
455 459Right-handed 310
Helix 35
AD8
B
460 470Right-handed alpha
Helix 36
AD9
B
470 475Right-handed alpha
Helix 37
AE1
B
502 513Right-handed alpha
Helix 38
AE2
B
527 532Right-handed 310
Helix 39
AE3
B
540 547Right-handed alpha
Helix 40
AE4
B
572 580Right-handed alpha
Helix 41
AE5
B
582 604Right-handed alpha
Helix 42
AE6
B
610 612Right-handed 310
Helix 43
AE7
B
613 626Right-handed alpha
Helix 44
AE8
B
628 635Right-handed alpha
Helix 45
AE9
B
639 663Right-handed alpha
Helix 46
AF1
B
667 684Right-handed alpha
Helix 47
AF2
B
708 717Right-handed alpha
Helix 48
AF3
B
718 722Right-handed 310
Helix 49
AF4
B
727 751Right-handed alpha
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There are 8 sheets in PDB entry 11QC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 192first strand
Strand 2
A
380 393anti-parallel
Strand 3
A
446 453anti-parallel
Strand 4
A
398 408parallel
Strand 5
A
478 483parallel
Strand 6
A
552 558parallel
Strand 7
A
493 498anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 214first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
372 377anti-parallel
Strand 4
A
226 230anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
299 300parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
254 258parallel
Strand 3
A
278 282parallel
Strand 4
A
334 336parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 192first strand
Strand 2
B
380 393anti-parallel
Strand 3
B
446 453anti-parallel
Strand 4
B
398 408parallel
Strand 5
B
478 483parallel
Strand 6
B
552 558parallel
Strand 7
B
493 498anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 214first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
372 377anti-parallel
Strand 4
B
226 230anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 221first strand
Strand 2
B
299 300parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
254 258parallel
Strand 3
B
278 282parallel
Strand 4
B
334 336parallel
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