Analysis of interatomic Contacts of Structural Units in PDB entry:
11QF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11QF entry

There are 6 chains in PDB entry 11QF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5PHE 301
B
 MET 0PHE 301
C
 G 1 G 26
D
 C 0 C 25
E
 G 1 G 26
F
 C 1 C 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 11QF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
49 60Right-handed alpha
Helix 3
AA3
A
81 95Right-handed alpha
Helix 4
AA4
A
100 117Right-handed alpha
Helix 5
AA5
A
118 121Right-handed 310
Helix 6
AA6
A
122 134Right-handed alpha
Helix 7
AA7
A
141 148Right-handed alpha
Helix 8
AA8
A
167 178Right-handed alpha
Helix 9
AA9
A
208 220Right-handed alpha
Helix 10
AB1
A
239 246Right-handed alpha
Helix 11
AB2
A
246 254Right-handed alpha
Helix 12
AB3
A
259 276Right-handed alpha
Helix 13
AB4
A
277 280Right-handed 310
Helix 14
AB5
A
281 294Right-handed alpha
Helix 15
AB6
A
295 299Right-handed 310
Helix 16
AB7
B
7 18Right-handed alpha
Helix 17
AB8
B
49 60Right-handed alpha
Helix 18
AB9
B
81 95Right-handed alpha
Helix 19
AC1
B
100 117Right-handed alpha
Helix 20
AC2
B
118 121Right-handed 310
Helix 21
AC3
B
122 134Right-handed alpha
Helix 22
AC4
B
141 148Right-handed alpha
Helix 23
AC5
B
167 178Right-handed alpha
Helix 24
AC6
B
208 220Right-handed alpha
Helix 25
AC7
B
239 246Right-handed alpha
Helix 26
AC8
B
246 254Right-handed alpha
Helix 27
AC9
B
259 276Right-handed alpha
Helix 28
AD1
B
277 280Right-handed 310
Helix 29
AD2
B
281 294Right-handed alpha
Helix 30
AD3
B
295 299Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 11QF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 27first strand
Strand 2
A
35 46anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 184first strand
Strand 2
A
197 205anti-parallel
Strand 3
A
232 237anti-parallel
Strand 4
A
223 226anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 27first strand
Strand 2
B
35 46anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
65 68anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 184first strand
Strand 2
B
197 205anti-parallel
Strand 3
B
232 237anti-parallel
Strand 4
B
223 226anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il