Analysis of interatomic Contacts of Structural Units in PDB entry:
11SS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11SS entry

There are 8 chains in PDB entry 11SS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 20	TRP 1504
D	MET 1	PHE 245
E	MET 1	TYR 234
G	MET 1	VAL 117
B	LYS 862	VAL 985
P	A 104	C 115
F	LEU -1	ILE 487
X	A 1	U 16

There are 76 helices in PDB entry 11SS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	117	Right-handed alpha
Helix 2	AA2	A	165	167	Right-handed 310
Helix 3	AA3	A	168	178	Right-handed alpha
Helix 4	AA4	A	194	203	Right-handed alpha
Helix 5	AA5	A	228	233	Right-handed alpha
Helix 6	AA6	A	235	246	Right-handed alpha
Helix 7	AA7	A	271	275	Right-handed 310
Helix 8	AA8	A	277	281	Right-handed 310
Helix 9	AA9	A	290	295	Right-handed alpha
Helix 10	AB1	A	306	322	Right-handed alpha
Helix 11	AB2	A	345	360	Right-handed alpha
Helix 12	AB3	A	385	390	Right-handed alpha
Helix 13	AB4	A	532	541	Right-handed alpha
Helix 14	AB5	A	554	558	Right-handed 310
Helix 15	AB6	A	612	623	Right-handed alpha
Helix 16	AB7	A	725	734	Right-handed alpha
Helix 17	AB8	A	744	760	Right-handed alpha
Helix 18	AB9	A	775	784	Right-handed alpha
Helix 19	AC1	A	788	794	Right-handed alpha
Helix 20	AC2	A	826	834	Right-handed alpha
Helix 21	AC3	A	840	850	Right-handed alpha
Helix 22	AC4	A	857	865	Right-handed alpha
Helix 23	AC5	A	870	896	Right-handed alpha
Helix 24	AC6	A	896	909	Right-handed alpha
Helix 25	AC7	A	913	918	Right-handed alpha
Helix 26	AC8	A	919	935	Right-handed alpha
Helix 27	AC9	A	943	949	Right-handed alpha
Helix 28	AD1	A	978	987	Right-handed alpha
Helix 29	AD2	A	1018	1023	Right-handed alpha
Helix 30	AD3	A	1044	1065	Right-handed alpha
Helix 31	AD4	A	1073	1097	Right-handed alpha
Helix 32	AD5	A	1106	1131	Right-handed alpha
Helix 33	AD6	A	1156	1172	Right-handed alpha
Helix 34	AD7	A	1224	1241	Right-handed alpha
Helix 35	AD8	A	1243	1261	Right-handed alpha
Helix 36	AD9	A	1286	1299	Right-handed alpha
Helix 37	AE1	A	1322	1326	Right-handed alpha
Helix 38	AE2	A	1329	1336	Right-handed alpha
Helix 39	AE3	A	1342	1360	Right-handed alpha
Helix 40	AE4	A	1365	1374	Right-handed alpha
Helix 41	AE5	A	1421	1450	Right-handed alpha
Helix 42	AE6	A	1450	1455	Right-handed alpha
Helix 43	AE7	A	1461	1466	Right-handed alpha
Helix 44	AE8	A	1473	1488	Right-handed alpha
Helix 45	AE9	A	1488	1503	Right-handed alpha
Helix 46	AF1	D	2	24	Right-handed alpha
Helix 47	AF2	D	28	30	Right-handed 310
Helix 48	AF3	D	51	68	Right-handed alpha
Helix 49	AF4	D	109	130	Right-handed alpha
Helix 50	AF5	E	4	24	Right-handed alpha
Helix 51	AF6	E	28	30	Right-handed 310
Helix 52	AF7	E	51	68	Right-handed alpha
Helix 53	AF8	E	109	131	Right-handed alpha
Helix 54	AF9	E	164	176	Right-handed alpha
Helix 55	AG1	G	2	15	Right-handed alpha
Helix 56	AG2	G	22	30	Right-handed alpha
Helix 57	AG3	G	32	46	Right-handed alpha
Helix 58	AG4	G	76	78	Right-handed 310
Helix 59	AG5	B	882	898	Right-handed alpha
Helix 60	AG6	B	904	921	Right-handed alpha
Helix 61	AG7	B	923	941	Right-handed alpha
Helix 62	AG8	B	950	966	Right-handed alpha
Helix 63	AG9	F	0	10	Right-handed alpha
Helix 64	AH1	F	53	76	Right-handed alpha
Helix 65	AH2	F	92	96	Right-handed 310
Helix 66	AH3	F	115	125	Right-handed alpha
Helix 67	AH4	F	131	138	Right-handed alpha
Helix 68	AH5	F	161	165	Right-handed 310
Helix 69	AH6	F	226	241	Right-handed alpha
Helix 70	AH7	F	247	252	Right-handed alpha
Helix 71	AH8	F	267	271	Right-handed 310
Helix 72	AH9	F	272	291	Right-handed alpha
Helix 73	AI1	F	321	329	Right-handed 310
Helix 74	AI2	F	357	365	Right-handed alpha
Helix 75	AI3	F	391	406	Right-handed alpha
Helix 76	AI4	F	411	416	Right-handed alpha

There are 21 sheets in PDB entry 11SS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	25	35	anti-parallel
Strand 3	A	56	64	anti-parallel
Strand 4	A	70	75	anti-parallel
Strand 5	A	266	270	parallel
Strand 6	A	217	218	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	133	134	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	156	163	anti-parallel
Strand 3	A	137	147	anti-parallel
Strand 4	A	937	938	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	179	first strand
Strand 2	A	520	522	anti-parallel
Strand 3	D	139	147	anti-parallel
Strand 4	D	72	81	anti-parallel
Strand 5	D	87	94	anti-parallel
Strand 6	D	213	219	anti-parallel
Strand 7	D	197	202	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	582	first strand
Strand 2	D	37	38	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	585	first strand
Strand 2	A	588	589	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	179	first strand
Strand 2	A	602	606	anti-parallel
Strand 3	E	139	147	anti-parallel
Strand 4	E	72	81	anti-parallel
Strand 5	E	87	94	anti-parallel
Strand 6	E	212	220	anti-parallel
Strand 7	E	196	205	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	742	first strand
Strand 2	A	712	717	parallel
Strand 3	A	691	698	anti-parallel
Strand 4	A	669	676	anti-parallel
Strand 5	A	763	766	parallel
Strand 6	A	822	825	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	965	967	first strand
Strand 2	A	1179	1192	anti-parallel
Strand 3	A	971	976	anti-parallel
Strand 4	A	1145	1149	anti-parallel
Strand 5	A	1137	1140	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	965	967	first strand
Strand 2	A	1179	1192	anti-parallel
Strand 3	A	1195	1201	anti-parallel
Strand 4	A	1210	1214	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	994	997	first strand
Strand 2	A	1034	1037	anti-parallel
Strand 3	A	1027	1029	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1008	first strand
Strand 2	A	1011	1013	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1270	1274	first strand
Strand 2	A	1308	1314	anti-parallel
Strand 3	A	1327	1328	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	48	49	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	231	232	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	41	49	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	21	first strand
Strand 2	G	80	89	anti-parallel
Strand 3	G	53	60	anti-parallel
Strand 4	G	64	68	anti-parallel
Strand 5	F	480	486	parallel
Strand 6	F	469	474	anti-parallel
Strand 7	F	213	217	anti-parallel
Strand 8	F	254	259	parallel
Strand 9	F	295	298	parallel
Strand 10	F	336	338	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	110	first strand
Strand 2	F	23	24	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	102	109	parallel
Strand 3	F	173	179	anti-parallel
Strand 4	F	184	191	anti-parallel
Strand 5	F	153	157	parallel
Strand 6	F	146	150	anti-parallel
Strand 7	F	102	109	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	366	367	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	343	347	first strand
Strand 2	F	350	355	anti-parallel
Strand 3	F	435	438	parallel
Strand 4	F	454	460	parallel
Strand 5	F	445	451	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11SS

Analysis of interatomic Contacts of Structural Units in PDB entry:
11SS