Analysis of interatomic Contacts of Structural Units in PDB entry:
11SV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11SV entry

There are 11 chains in PDB entry 11SV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 299	MET 717
B	PRO 106	GLY 505
C	LEU 7	LEU 685
D	VAL 34	ARG 510
E	MET 1	ASN 464
F	ASP 182	GLN 351
G	LEU 95	LYS 602
K	ALA 2	VAL 13
L	VAL 13	VAL 20
X	C 6	G 38
Y	C 23	G 55

There are163 helices in PDB entry 11SV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	326	335	Right-handed alpha
Helix 2	AA2	A	347	365	Right-handed alpha
Helix 3	AA3	A	379	397	Right-handed alpha
Helix 4	AA4	A	411	413	Right-handed 310
Helix 5	AA5	A	417	429	Right-handed alpha
Helix 6	AA6	A	433	446	Right-handed alpha
Helix 7	AA7	A	460	465	Right-handed 310
Helix 8	AA8	A	469	478	Right-handed alpha
Helix 9	AA9	A	479	481	Right-handed 310
Helix 10	AB1	A	496	501	Right-handed alpha
Helix 11	AB2	A	503	511	Right-handed alpha
Helix 12	AB3	A	521	534	Right-handed alpha
Helix 13	AB4	A	538	543	Right-handed 310
Helix 14	AB5	A	545	558	Right-handed alpha
Helix 15	AB6	A	562	581	Right-handed alpha
Helix 16	AB7	A	585	595	Right-handed alpha
Helix 17	AB8	A	609	627	Right-handed alpha
Helix 18	AB9	A	633	646	Right-handed alpha
Helix 19	AC1	A	649	658	Right-handed alpha
Helix 20	AC2	A	668	679	Right-handed alpha
Helix 21	AC3	A	700	708	Right-handed alpha
Helix 22	AC4	A	711	715	Right-handed 310
Helix 23	AC5	B	129	133	Right-handed 310
Helix 24	AC6	B	138	149	Right-handed alpha
Helix 25	AC7	B	157	161	Right-handed 310
Helix 26	AC8	B	165	180	Right-handed alpha
Helix 27	AC9	B	181	194	Right-handed alpha
Helix 28	AD1	B	195	205	Right-handed alpha
Helix 29	AD2	B	217	229	Right-handed alpha
Helix 30	AD3	B	246	262	Right-handed alpha
Helix 31	AD4	B	262	269	Right-handed alpha
Helix 32	AD5	B	273	277	Right-handed 310
Helix 33	AD6	B	280	295	Right-handed alpha
Helix 34	AD7	B	317	329	Right-handed alpha
Helix 35	AD8	B	343	348	Right-handed 310
Helix 36	AD9	B	349	357	Right-handed alpha
Helix 37	AE1	B	369	374	Right-handed alpha
Helix 38	AE2	B	375	376	Right-handed 310
Helix 39	AE3	B	377	381	Right-handed 310
Helix 40	AE4	B	382	388	Right-handed 310
Helix 41	AE5	B	401	418	Right-handed alpha
Helix 42	AE6	B	439	443	Right-handed 310
Helix 43	AE7	B	445	456	Right-handed alpha
Helix 44	AE8	B	465	475	Right-handed alpha
Helix 45	AE9	B	500	504	Right-handed alpha
Helix 46	AF1	C	10	14	Right-handed 310
Helix 47	AF2	C	20	28	Right-handed alpha
Helix 48	AF3	C	93	122	Right-handed alpha
Helix 49	AF4	C	123	136	Right-handed alpha
Helix 50	AF5	C	153	155	Right-handed 310
Helix 51	AF6	C	156	169	Right-handed alpha
Helix 52	AF7	C	186	199	Right-handed alpha
Helix 53	AF8	C	201	209	Right-handed alpha
Helix 54	AF9	C	211	215	Right-handed 310
Helix 55	AG1	C	218	222	Right-handed 310
Helix 56	AG2	C	224	236	Right-handed alpha
Helix 57	AG3	C	254	268	Right-handed alpha
Helix 58	AG4	C	283	291	Right-handed alpha
Helix 59	AG5	C	292	297	Right-handed alpha
Helix 60	AG6	C	308	321	Right-handed alpha
Helix 61	AG7	C	331	345	Right-handed alpha
Helix 62	AG8	C	348	367	Right-handed alpha
Helix 63	AG9	C	368	372	Right-handed 310
Helix 64	AH1	C	381	391	Right-handed alpha
Helix 65	AH2	C	392	400	Right-handed alpha
Helix 66	AH3	C	402	411	Right-handed alpha
Helix 67	AH4	C	414	424	Right-handed alpha
Helix 68	AH5	C	424	461	Right-handed alpha
Helix 69	AH6	C	468	477	Right-handed alpha
Helix 70	AH7	C	484	497	Right-handed alpha
Helix 71	AH8	C	498	510	Right-handed alpha
Helix 72	AH9	C	511	516	Right-handed 310
Helix 73	AI1	C	525	535	Right-handed alpha
Helix 74	AI2	C	537	541	Right-handed 310
Helix 75	AI3	C	543	548	Right-handed alpha
Helix 76	AI4	C	551	560	Right-handed alpha
Helix 77	AI5	C	562	573	Right-handed alpha
Helix 78	AI6	C	574	579	Right-handed alpha
Helix 79	AI7	C	592	604	Right-handed alpha
Helix 80	AI8	C	610	620	Right-handed alpha
Helix 81	AI9	C	622	633	Right-handed alpha
Helix 82	AJ1	C	642	664	Right-handed alpha
Helix 83	AJ2	D	47	63	Right-handed alpha
Helix 84	AJ3	D	73	89	Right-handed alpha
Helix 85	AJ4	D	105	122	Right-handed alpha
Helix 86	AJ5	D	142	159	Right-handed alpha
Helix 87	AJ6	D	169	186	Right-handed alpha
Helix 88	AJ7	D	203	207	Right-handed 310
Helix 89	AJ8	D	212	225	Right-handed alpha
Helix 90	AJ9	D	240	244	Right-handed 310
Helix 91	AK1	D	245	252	Right-handed alpha
Helix 92	AK2	D	264	277	Right-handed alpha
Helix 93	AK3	D	279	283	Right-handed 310
Helix 94	AK4	D	298	318	Right-handed alpha
Helix 95	AK5	D	319	332	Right-handed alpha
Helix 96	AK6	D	334	348	Right-handed alpha
Helix 97	AK7	D	354	359	Right-handed 310
Helix 98	AK8	D	369	376	Right-handed alpha
Helix 99	AK9	D	378	395	Right-handed alpha
Helix 100	AL1	D	401	419	Right-handed alpha
Helix 101	AL2	D	440	454	Right-handed alpha
Helix 102	AL3	D	467	471	Right-handed 310
Helix 103	AL4	D	489	498	Right-handed alpha
Helix 104	AL5	D	503	508	Right-handed 310
Helix 105	AL6	E	3	14	Right-handed alpha
Helix 106	AL7	E	17	28	Right-handed alpha
Helix 107	AL8	E	31	35	Right-handed 310
Helix 108	AL9	E	48	60	Right-handed alpha
Helix 109	AM1	E	70	72	Right-handed 310
Helix 110	AM2	E	74	90	Right-handed alpha
Helix 111	AM3	E	104	120	Right-handed alpha
Helix 112	AM4	E	131	135	Right-handed 310
Helix 113	AM5	E	139	148	Right-handed alpha
Helix 114	AM6	E	148	153	Right-handed alpha
Helix 115	AM7	E	169	173	Right-handed 310
Helix 116	AM8	E	186	197	Right-handed alpha
Helix 117	AM9	E	203	211	Right-handed alpha
Helix 118	AN1	E	215	243	Right-handed alpha
Helix 119	AN2	E	245	266	Right-handed alpha
Helix 120	AN3	E	273	288	Right-handed alpha
Helix 121	AN4	E	321	337	Right-handed alpha
Helix 122	AN5	E	338	340	Right-handed 310
Helix 123	AN6	E	341	347	Right-handed alpha
Helix 124	AN7	E	368	372	Right-handed 310
Helix 125	AN8	E	378	390	Right-handed alpha
Helix 126	AN9	E	396	403	Right-handed 310
Helix 127	AO1	E	407	419	Right-handed alpha
Helix 128	AO2	E	441	452	Right-handed alpha
Helix 129	AO3	E	455	460	Right-handed 310
Helix 130	AO4	F	185	196	Right-handed alpha
Helix 131	AO5	F	199	214	Right-handed alpha
Helix 132	AO6	F	215	217	Right-handed 310
Helix 133	AO7	F	219	235	Right-handed alpha
Helix 134	AO8	F	237	241	Right-handed 310
Helix 135	AO9	F	243	258	Right-handed alpha
Helix 136	AP1	F	264	280	Right-handed alpha
Helix 137	AP2	F	282	292	Right-handed alpha
Helix 138	AP3	F	297	307	Right-handed alpha
Helix 139	AP4	F	320	324	Right-handed 310
Helix 140	AP5	F	327	350	Right-handed alpha
Helix 141	AP6	G	96	108	Right-handed alpha
Helix 142	AP7	G	113	117	Right-handed 310
Helix 143	AP8	G	127	143	Right-handed alpha
Helix 144	AP9	G	162	175	Right-handed alpha
Helix 145	AQ1	G	189	191	Right-handed 310
Helix 146	AQ2	G	193	195	Right-handed 310
Helix 147	AQ3	G	196	207	Right-handed alpha
Helix 148	AQ4	G	219	232	Right-handed alpha
Helix 149	AQ5	G	235	242	Right-handed alpha
Helix 150	AQ6	G	251	255	Right-handed 310
Helix 151	AQ7	G	260	272	Right-handed alpha
Helix 152	AQ8	G	287	293	Right-handed alpha
Helix 153	AQ9	G	294	299	Right-handed alpha
Helix 154	AR1	G	312	332	Right-handed alpha
Helix 155	AR2	G	391	405	Right-handed alpha
Helix 156	AR3	G	408	432	Right-handed alpha
Helix 157	AR4	G	445	457	Right-handed alpha
Helix 158	AR5	G	462	466	Right-handed alpha
Helix 159	AR6	G	469	494	Right-handed alpha
Helix 160	AR7	G	500	516	Right-handed alpha
Helix 161	AR8	G	522	536	Right-handed alpha
Helix 162	AR9	G	587	595	Right-handed alpha
Helix 163	AS1	G	597	602	Right-handed alpha

There are 11 sheets in PDB entry 11SV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	409	first strand
Strand 2	A	454	459	parallel
Strand 3	A	486	491	parallel
Strand 4	A	368	374	parallel
Strand 5	A	514	517	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	632	first strand
Strand 2	A	694	697	anti-parallel
Strand 3	A	682	684	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	362	first strand
Strand 2	B	208	212	parallel
Strand 3	B	333	338	parallel
Strand 4	B	303	308	parallel
Strand 5	B	235	239	parallel
Strand 6	C	16	18	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	179	first strand
Strand 2	C	242	247	parallel
Strand 3	C	274	279	parallel
Strand 4	C	143	149	parallel
Strand 5	C	299	305	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	607	609	first strand
Strand 2	C	676	679	anti-parallel
Strand 3	C	667	669	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	136	first strand
Strand 2	D	195	201	parallel
Strand 3	D	229	235	parallel
Strand 4	D	94	99	parallel
Strand 5	D	256	258	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	459	first strand
Strand 2	D	484	486	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	68	first strand
Strand 2	E	125	130	parallel
Strand 3	E	158	164	parallel
Strand 4	E	38	42	parallel
Strand 5	E	179	181	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	422	424	first strand
Strand 2	E	436	438	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	187	first strand
Strand 2	G	244	250	parallel
Strand 3	G	277	282	parallel
Strand 4	G	152	156	parallel
Strand 5	G	304	307	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	539	544	first strand
Strand 2	G	580	584	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11SV

Analysis of interatomic Contacts of Structural Units in PDB entry:
11SV