Analysis of interatomic Contacts of Structural Units in PDB entry:
11SZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11SZ entry

There are 6 chains in PDB entry 11SZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 8	GLU 897
B	SER 6	GLU 897
C	THR 61	SER 119
D	ASP 17	LYS 129
H	GLU 3	SER 119
L	LEU 54	LEU 118

There are 81 helices in PDB entry 11SZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	33	Right-handed alpha
Helix 2	AA2	A	50	60	Right-handed alpha
Helix 3	AA3	A	105	110	Right-handed alpha
Helix 4	AA4	A	112	118	Right-handed alpha
Helix 5	AA5	A	120	137	Right-handed alpha
Helix 6	AA6	A	140	144	Right-handed 310
Helix 7	AA7	A	159	166	Right-handed alpha
Helix 8	AA8	A	173	178	Right-handed alpha
Helix 9	AA9	A	181	192	Right-handed alpha
Helix 10	AB1	A	202	204	Right-handed 310
Helix 11	AB2	A	205	220	Right-handed alpha
Helix 12	AB3	A	237	247	Right-handed alpha
Helix 13	AB4	A	279	286	Right-handed alpha
Helix 14	AB5	A	311	327	Right-handed alpha
Helix 15	AB6	A	329	333	Right-handed 310
Helix 16	AB7	A	345	359	Right-handed alpha
Helix 17	AB8	A	378	380	Right-handed 310
Helix 18	AB9	A	381	397	Right-handed alpha
Helix 19	AC1	A	413	417	Right-handed 310
Helix 20	AC2	A	480	498	Right-handed alpha
Helix 21	AC3	A	502	513	Right-handed alpha
Helix 22	AC4	A	527	538	Right-handed alpha
Helix 23	AC5	A	567	574	Right-handed alpha
Helix 24	AC6	A	574	590	Right-handed alpha
Helix 25	AC7	A	596	604	Right-handed alpha
Helix 26	AC8	A	606	609	Right-handed 310
Helix 27	AC9	A	610	632	Right-handed alpha
Helix 28	AD1	A	643	653	Right-handed alpha
Helix 29	AD2	A	657	674	Right-handed alpha
Helix 30	AD3	A	687	692	Right-handed alpha
Helix 31	AD4	A	716	729	Right-handed alpha
Helix 32	AD5	A	744	748	Right-handed 310
Helix 33	AD6	A	749	759	Right-handed alpha
Helix 34	AD7	A	783	793	Right-handed alpha
Helix 35	AD8	A	797	807	Right-handed alpha
Helix 36	AD9	A	819	830	Right-handed alpha
Helix 37	AE1	A	845	859	Right-handed alpha
Helix 38	AE2	A	865	869	Right-handed 310
Helix 39	AE3	B	12	27	Right-handed alpha
Helix 40	AE4	B	27	32	Right-handed alpha
Helix 41	AE5	B	50	60	Right-handed alpha
Helix 42	AE6	B	75	80	Right-handed alpha
Helix 43	AE7	B	112	118	Right-handed alpha
Helix 44	AE8	B	120	137	Right-handed alpha
Helix 45	AE9	B	140	144	Right-handed 310
Helix 46	AF1	B	159	165	Right-handed alpha
Helix 47	AF2	B	173	179	Right-handed alpha
Helix 48	AF3	B	180	192	Right-handed alpha
Helix 49	AF4	B	202	204	Right-handed 310
Helix 50	AF5	B	205	219	Right-handed alpha
Helix 51	AF6	B	237	247	Right-handed alpha
Helix 52	AF7	B	279	286	Right-handed alpha
Helix 53	AF8	B	311	327	Right-handed alpha
Helix 54	AF9	B	329	333	Right-handed 310
Helix 55	AG1	B	345	359	Right-handed alpha
Helix 56	AG2	B	378	381	Right-handed 310
Helix 57	AG3	B	382	397	Right-handed alpha
Helix 58	AG4	B	413	417	Right-handed 310
Helix 59	AG5	B	480	498	Right-handed alpha
Helix 60	AG6	B	502	513	Right-handed alpha
Helix 61	AG7	B	527	538	Right-handed alpha
Helix 62	AG8	B	567	574	Right-handed alpha
Helix 63	AG9	B	574	590	Right-handed alpha
Helix 64	AH1	B	596	603	Right-handed alpha
Helix 65	AH2	B	606	610	Right-handed 310
Helix 66	AH3	B	611	632	Right-handed alpha
Helix 67	AH4	B	643	653	Right-handed alpha
Helix 68	AH5	B	657	674	Right-handed alpha
Helix 69	AH6	B	687	692	Right-handed alpha
Helix 70	AH7	B	716	728	Right-handed alpha
Helix 71	AH8	B	744	749	Right-handed 310
Helix 72	AH9	B	750	759	Right-handed alpha
Helix 73	AI1	B	783	793	Right-handed alpha
Helix 74	AI2	B	797	808	Right-handed alpha
Helix 75	AI3	B	819	830	Right-handed alpha
Helix 76	AI4	B	845	860	Right-handed alpha
Helix 77	AI5	B	865	869	Right-handed 310
Helix 78	AI6	C	65	69	Right-handed 310
Helix 79	AI7	C	91	95	Right-handed 310
Helix 80	AI8	D	100	104	Right-handed 310
Helix 81	AI9	H	65	69	Right-handed 310

There are 21 sheets in PDB entry 11SZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	366	369	parallel
Strand 3	A	335	337	parallel
Strand 4	A	436	442	parallel
Strand 5	A	447	455	anti-parallel
Strand 6	A	291	300	anti-parallel
Strand 7	A	35	43	anti-parallel
Strand 8	A	270	278	anti-parallel
Strand 9	A	225	232	anti-parallel
Strand 10	A	149	154	parallel
Strand 11	A	197	201	parallel
Strand 12	B	197	201	anti-parallel
Strand 13	B	149	154	parallel
Strand 14	B	225	232	parallel
Strand 15	B	270	278	anti-parallel
Strand 16	B	35	43	anti-parallel
Strand 17	B	291	300	anti-parallel
Strand 18	B	447	455	anti-parallel
Strand 19	B	436	442	anti-parallel
Strand 20	B	335	337	parallel
Strand 21	B	366	369	parallel
Strand 22	B	419	421	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	94	95	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	889	890	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	426	427	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	478	first strand
Strand 2	A	519	525	anti-parallel
Strand 3	A	543	545	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	638	640	parallel
Strand 3	A	551	556	parallel
Strand 4	A	809	815	parallel
Strand 5	A	836	837	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	734	first strand
Strand 2	A	679	684	anti-parallel
Strand 3	A	710	715	anti-parallel
Strand 4	A	699	704	anti-parallel
Strand 5	A	795	796	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	94	95	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	889	890	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	399	first strand
Strand 2	B	426	427	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	478	first strand
Strand 2	B	519	525	anti-parallel
Strand 3	B	542	545	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	641	first strand
Strand 2	B	551	556	parallel
Strand 3	B	809	815	parallel
Strand 4	B	836	837	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	734	first strand
Strand 2	B	679	684	anti-parallel
Strand 3	B	710	715	anti-parallel
Strand 4	B	699	704	anti-parallel
Strand 5	B	795	796	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	84	87	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	114	116	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	91	96	anti-parallel
Strand 3	D	83	88	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	54	59	anti-parallel
Strand 3	D	105	111	anti-parallel
Strand 4	D	124	126	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	21	27	anti-parallel
Strand 3	H	82	87	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	53	first strand
Strand 2	H	36	41	anti-parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	114	116	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	55	58	first strand
Strand 2	L	107	110	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	70	first strand
Strand 2	L	74	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11SZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
11SZ