Analysis of interatomic Contacts of Structural Units in PDB entry:
11TD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11TD entry

There are 3 chains in PDB entry 11TD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 LYS 35LEU 440
H
 GLU 4SER 126
L
 ASP 2LYS 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 11TD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
35 67Right-handed alpha
Helix 2
AA2
R
72 90Right-handed alpha
Helix 3
AA3
R
91 101Right-handed alpha
Helix 4
AA4
R
106 141Right-handed alpha
Helix 5
AA5
R
143 148Right-handed alpha
Helix 6
AA6
R
150 175Right-handed alpha
Helix 7
AA7
R
195 255Right-handed alpha
Helix 8
AA8
R
258 279Right-handed alpha
Helix 9
AA9
R
292 318Right-handed alpha
Helix 10
AB1
R
320 385Right-handed alpha
Helix 11
AB2
R
390 420Right-handed alpha
Helix 12
AB3
R
426 440Right-handed alpha
Helix 13
AB4
H
31 35Right-handed 310
Helix 14
AB5
H
90 94Right-handed 310
Helix 15
AB6
H
107 112Right-handed alpha
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There are 6 sheets in PDB entry 11TD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
176 181first strand
Strand 2
R
184 189anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
20 28anti-parallel
Strand 3
H
81 87anti-parallel
Strand 4
H
71 76anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
121 125parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
36 42anti-parallel
Strand 5
H
48 55anti-parallel
Strand 6
H
60 63anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
104 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
104 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
99 100anti-parallel
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