Analysis of interatomic Contacts of Structural Units in PDB entry:
11UF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11UF entry

There are 6 chains in PDB entry 11UF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 394	ALA 1034
B	THR 394	ALA 820
C	THR 394	ALA 1034
D	THR 394	ALA 820
E	ALA 2	SER 143
F	ALA 2	SER 143

There are 86 helices in PDB entry 11UF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	416	419	Right-handed 310
Helix 2	AA2	A	423	436	Right-handed alpha
Helix 3	AA3	A	462	469	Right-handed alpha
Helix 4	AA4	A	482	487	Right-handed alpha
Helix 5	AA5	A	522	544	Right-handed alpha
Helix 6	AA6	A	572	585	Right-handed alpha
Helix 7	AA7	A	595	626	Right-handed alpha
Helix 8	AA8	A	635	641	Right-handed alpha
Helix 9	AA9	A	653	661	Right-handed alpha
Helix 10	AB1	A	664	676	Right-handed alpha
Helix 11	AB2	A	685	697	Right-handed alpha
Helix 12	AB3	A	706	713	Right-handed alpha
Helix 13	AB4	A	742	756	Right-handed alpha
Helix 14	AB5	A	757	768	Right-handed alpha
Helix 15	AB6	A	793	820	Right-handed alpha
Helix 16	AB7	A	834	858	Right-handed alpha
Helix 17	AB8	A	903	907	Right-handed 310
Helix 18	AB9	A	911	916	Right-handed 310
Helix 19	AC1	A	918	929	Right-handed alpha
Helix 20	AC2	A	929	952	Right-handed alpha
Helix 21	AC3	A	956	991	Right-handed alpha
Helix 22	AC4	A	1006	1034	Right-handed alpha
Helix 23	AC5	B	416	419	Right-handed 310
Helix 24	AC6	B	423	436	Right-handed alpha
Helix 25	AC7	B	461	469	Right-handed alpha
Helix 26	AC8	B	482	487	Right-handed alpha
Helix 27	AC9	B	515	519	Right-handed 310
Helix 28	AD1	B	522	546	Right-handed alpha
Helix 29	AD2	B	572	585	Right-handed alpha
Helix 30	AD3	B	595	617	Right-handed alpha
Helix 31	AD4	B	619	625	Right-handed alpha
Helix 32	AD5	B	635	640	Right-handed alpha
Helix 33	AD6	B	653	661	Right-handed alpha
Helix 34	AD7	B	665	677	Right-handed alpha
Helix 35	AD8	B	685	696	Right-handed alpha
Helix 36	AD9	B	706	713	Right-handed alpha
Helix 37	AE1	B	743	756	Right-handed alpha
Helix 38	AE2	B	757	767	Right-handed alpha
Helix 39	AE3	B	793	820	Right-handed alpha
Helix 40	AE4	C	416	419	Right-handed 310
Helix 41	AE5	C	423	436	Right-handed alpha
Helix 42	AE6	C	462	469	Right-handed alpha
Helix 43	AE7	C	482	487	Right-handed alpha
Helix 44	AE8	C	522	544	Right-handed alpha
Helix 45	AE9	C	572	585	Right-handed alpha
Helix 46	AF1	C	595	626	Right-handed alpha
Helix 47	AF2	C	635	641	Right-handed alpha
Helix 48	AF3	C	653	661	Right-handed alpha
Helix 49	AF4	C	664	676	Right-handed alpha
Helix 50	AF5	C	685	697	Right-handed alpha
Helix 51	AF6	C	706	713	Right-handed alpha
Helix 52	AF7	C	742	756	Right-handed alpha
Helix 53	AF8	C	757	768	Right-handed alpha
Helix 54	AF9	C	793	820	Right-handed alpha
Helix 55	AG1	C	834	858	Right-handed alpha
Helix 56	AG2	C	903	907	Right-handed 310
Helix 57	AG3	C	911	916	Right-handed 310
Helix 58	AG4	C	918	929	Right-handed alpha
Helix 59	AG5	C	929	952	Right-handed alpha
Helix 60	AG6	C	956	991	Right-handed alpha
Helix 61	AG7	C	1006	1034	Right-handed alpha
Helix 62	AG8	D	416	419	Right-handed 310
Helix 63	AG9	D	423	436	Right-handed alpha
Helix 64	AH1	D	461	469	Right-handed alpha
Helix 65	AH2	D	482	487	Right-handed alpha
Helix 66	AH3	D	515	519	Right-handed 310
Helix 67	AH4	D	522	546	Right-handed alpha
Helix 68	AH5	D	572	585	Right-handed alpha
Helix 69	AH6	D	595	617	Right-handed alpha
Helix 70	AH7	D	619	625	Right-handed alpha
Helix 71	AH8	D	635	640	Right-handed alpha
Helix 72	AH9	D	653	661	Right-handed alpha
Helix 73	AI1	D	665	677	Right-handed alpha
Helix 74	AI2	D	685	696	Right-handed alpha
Helix 75	AI3	D	706	713	Right-handed alpha
Helix 76	AI4	D	743	756	Right-handed alpha
Helix 77	AI5	D	757	767	Right-handed alpha
Helix 78	AI6	D	793	820	Right-handed alpha
Helix 79	AI7	E	4	38	Right-handed alpha
Helix 80	AI8	E	41	70	Right-handed alpha
Helix 81	AI9	E	74	91	Right-handed alpha
Helix 82	AJ1	E	111	142	Right-handed alpha
Helix 83	AJ2	F	4	38	Right-handed alpha
Helix 84	AJ3	F	41	70	Right-handed alpha
Helix 85	AJ4	F	74	91	Right-handed alpha
Helix 86	AJ5	F	111	142	Right-handed alpha

There are 18 sheets in PDB entry 11UF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	443	444	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	866	first strand
Strand 2	A	999	1000	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	884	first strand
Strand 2	A	889	891	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	399	first strand
Strand 2	B	443	444	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	705	first strand
Strand 2	B	500	503	anti-parallel
Strand 3	B	722	723	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	443	444	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	865	866	first strand
Strand 2	C	999	1000	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	889	891	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	399	first strand
Strand 2	D	443	444	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	705	first strand
Strand 2	D	500	503	anti-parallel
Strand 3	D	722	723	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11UF

Analysis of interatomic Contacts of Structural Units in PDB entry:
11UF