Analysis of interatomic Contacts of Structural Units in PDB entry:
11UG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11UG entry

There are 4 chains in PDB entry 11UG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 393	GLU 1237
B	VAL 395	ALA 820
C	LYS 393	GLU 1237
D	VAL 395	ALA 820

There are 74 helices in PDB entry 11UG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	423	435	Right-handed alpha
Helix 2	AA2	A	462	469	Right-handed alpha
Helix 3	AA3	A	482	487	Right-handed alpha
Helix 4	AA4	A	515	519	Right-handed 310
Helix 5	AA5	A	522	544	Right-handed alpha
Helix 6	AA6	A	572	585	Right-handed alpha
Helix 7	AA7	A	595	627	Right-handed alpha
Helix 8	AA8	A	654	661	Right-handed alpha
Helix 9	AA9	A	664	676	Right-handed alpha
Helix 10	AB1	A	685	695	Right-handed alpha
Helix 11	AB2	A	708	713	Right-handed alpha
Helix 12	AB3	A	743	756	Right-handed alpha
Helix 13	AB4	A	757	768	Right-handed alpha
Helix 14	AB5	A	793	822	Right-handed alpha
Helix 15	AB6	A	1005	1016	Right-handed alpha
Helix 16	AB7	A	1023	1028	Right-handed alpha
Helix 17	AB8	A	1114	1116	Right-handed 310
Helix 18	AB9	A	1118	1151	Right-handed alpha
Helix 19	AC1	A	1160	1165	Right-handed alpha
Helix 20	AC2	A	1168	1173	Right-handed alpha
Helix 21	AC3	A	1173	1194	Right-handed alpha
Helix 22	AC4	A	1213	1236	Right-handed alpha
Helix 23	AC5	B	416	421	Right-handed 310
Helix 24	AC6	B	423	437	Right-handed alpha
Helix 25	AC7	B	463	469	Right-handed alpha
Helix 26	AC8	B	482	487	Right-handed alpha
Helix 27	AC9	B	522	547	Right-handed alpha
Helix 28	AD1	B	572	585	Right-handed alpha
Helix 29	AD2	B	595	624	Right-handed alpha
Helix 30	AD3	B	635	642	Right-handed alpha
Helix 31	AD4	B	653	662	Right-handed alpha
Helix 32	AD5	B	664	675	Right-handed alpha
Helix 33	AD6	B	685	696	Right-handed alpha
Helix 34	AD7	B	706	713	Right-handed alpha
Helix 35	AD8	B	742	753	Right-handed alpha
Helix 36	AD9	B	757	768	Right-handed alpha
Helix 37	AE1	B	793	817	Right-handed alpha
Helix 38	AE2	C	423	435	Right-handed alpha
Helix 39	AE3	C	462	469	Right-handed alpha
Helix 40	AE4	C	482	487	Right-handed alpha
Helix 41	AE5	C	515	519	Right-handed 310
Helix 42	AE6	C	522	544	Right-handed alpha
Helix 43	AE7	C	572	585	Right-handed alpha
Helix 44	AE8	C	595	627	Right-handed alpha
Helix 45	AE9	C	654	661	Right-handed alpha
Helix 46	AF1	C	664	676	Right-handed alpha
Helix 47	AF2	C	685	695	Right-handed alpha
Helix 48	AF3	C	708	713	Right-handed alpha
Helix 49	AF4	C	743	756	Right-handed alpha
Helix 50	AF5	C	757	768	Right-handed alpha
Helix 51	AF6	C	793	822	Right-handed alpha
Helix 52	AF7	C	1005	1016	Right-handed alpha
Helix 53	AF8	C	1023	1028	Right-handed alpha
Helix 54	AF9	C	1114	1116	Right-handed 310
Helix 55	AG1	C	1118	1151	Right-handed alpha
Helix 56	AG2	C	1160	1165	Right-handed alpha
Helix 57	AG3	C	1168	1173	Right-handed alpha
Helix 58	AG4	C	1173	1194	Right-handed alpha
Helix 59	AG5	C	1213	1236	Right-handed alpha
Helix 60	AG6	D	416	421	Right-handed 310
Helix 61	AG7	D	423	437	Right-handed alpha
Helix 62	AG8	D	463	469	Right-handed alpha
Helix 63	AG9	D	482	487	Right-handed alpha
Helix 64	AH1	D	522	547	Right-handed alpha
Helix 65	AH2	D	572	585	Right-handed alpha
Helix 66	AH3	D	595	624	Right-handed alpha
Helix 67	AH4	D	635	642	Right-handed alpha
Helix 68	AH5	D	653	662	Right-handed alpha
Helix 69	AH6	D	664	675	Right-handed alpha
Helix 70	AH7	D	685	696	Right-handed alpha
Helix 71	AH8	D	706	713	Right-handed alpha
Helix 72	AH9	D	742	753	Right-handed alpha
Helix 73	AI1	D	757	768	Right-handed alpha
Helix 74	AI2	D	793	817	Right-handed alpha

There are 16 sheets in PDB entry 11UG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	439	440	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	736	737	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	503	first strand
Strand 2	A	700	705	anti-parallel
Strand 3	A	646	648	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1203	1206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1097	1100	first strand
Strand 2	A	1109	1112	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	454	first strand
Strand 2	B	459	462	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	730	731	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	504	anti-parallel
Strand 4	B	721	723	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	395	first strand
Strand 2	C	439	440	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	490	first strand
Strand 2	C	736	737	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	500	503	first strand
Strand 2	C	700	705	anti-parallel
Strand 3	C	646	648	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1036	first strand
Strand 2	C	1203	1206	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1097	1100	first strand
Strand 2	C	1109	1112	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	454	first strand
Strand 2	D	459	462	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	498	first strand
Strand 2	D	730	731	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	504	anti-parallel
Strand 4	D	721	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11UG

Analysis of interatomic Contacts of Structural Units in PDB entry:
11UG