Analysis of interatomic Contacts of Structural Units in PDB entry:
11VD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11VD entry

There are 4 chains in PDB entry 11VD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8HIS 95
B
 LYS 3LYS 180
C
 ALA 9HIS 95
D
 GLU 2LYS 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 11VD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
54 73Right-handed alpha
Helix 4
AA4
A
76 95Right-handed alpha
Helix 5
AA5
B
15 23Right-handed alpha
Helix 6
AA6
B
27 37Right-handed alpha
Helix 7
AA7
B
51 63Right-handed alpha
Helix 8
AA8
B
107 112Right-handed alpha
Helix 9
AA9
B
114 121Right-handed alpha
Helix 10
AB1
B
126 135Right-handed alpha
Helix 11
AB2
B
148 152Right-handed 310
Helix 12
AB3
B
156 158Right-handed 310
Helix 13
AB4
B
165 177Right-handed alpha
Helix 14
AB5
C
12 30Right-handed alpha
Helix 15
AB6
C
31 44Right-handed alpha
Helix 16
AB7
C
54 73Right-handed alpha
Helix 17
AB8
C
76 95Right-handed alpha
Helix 18
AB9
D
15 23Right-handed alpha
Helix 19
AC1
D
27 37Right-handed alpha
Helix 20
AC2
D
51 54Right-handed 310
Helix 21
AC3
D
55 63Right-handed alpha
Helix 22
AC4
D
107 112Right-handed alpha
Helix 23
AC5
D
114 121Right-handed alpha
Helix 24
AC6
D
126 135Right-handed alpha
Helix 25
AC7
D
148 152Right-handed 310
Helix 26
AC8
D
156 158Right-handed 310
Helix 27
AC9
D
165 177Right-handed alpha
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There are 4 sheets in PDB entry 11VD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
39 42anti-parallel
Strand 3
B
47 49anti-parallel
Strand 4
B
70 75anti-parallel
Strand 5
B
80 84anti-parallel
Strand 6
B
87 92anti-parallel
Strand 7
B
97 103anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
B
160 164anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 12first strand
Strand 2
D
39 42anti-parallel
Strand 3
D
47 49anti-parallel
Strand 4
D
70 75anti-parallel
Strand 5
D
80 84anti-parallel
Strand 6
D
87 92anti-parallel
Strand 7
D
97 103anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 145first strand
Strand 2
D
160 164anti-parallel
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