Analysis of interatomic Contacts of Structural Units in PDB entry:
11VK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 11VK entry

There are 8 chains in PDB entry 11VK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	HIS 165
B	SER 2	GLN 184
C	ILE 4	HIS 165
D	SER 2	GLN 184
E	ARG 3	HIS 165
F	SER 2	GLN 184
G	ARG 3	HIS 165
H	SER 2	PHE 179

There are 58 helices in PDB entry 11VK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	34	Right-handed alpha
Helix 2	AA2	A	37	50	Right-handed alpha
Helix 3	AA3	A	58	79	Right-handed alpha
Helix 4	AA4	A	82	97	Right-handed alpha
Helix 5	AA5	A	133	146	Right-handed alpha
Helix 6	AA6	A	149	154	Right-handed alpha
Helix 7	AA7	B	14	22	Right-handed alpha
Helix 8	AA8	B	26	37	Right-handed alpha
Helix 9	AA9	B	50	62	Right-handed alpha
Helix 10	AB1	B	108	116	Right-handed alpha
Helix 11	AB2	B	118	125	Right-handed alpha
Helix 12	AB3	B	130	139	Right-handed alpha
Helix 13	AB4	B	160	162	Right-handed 310
Helix 14	AB5	B	169	181	Right-handed alpha
Helix 15	AB6	C	18	34	Right-handed alpha
Helix 16	AB7	C	37	50	Right-handed alpha
Helix 17	AB8	C	58	79	Right-handed alpha
Helix 18	AB9	C	82	97	Right-handed alpha
Helix 19	AC1	C	132	145	Right-handed alpha
Helix 20	AC2	C	146	148	Right-handed 310
Helix 21	AC3	C	149	155	Right-handed alpha
Helix 22	AC4	D	14	22	Right-handed alpha
Helix 23	AC5	D	26	37	Right-handed alpha
Helix 24	AC6	D	50	62	Right-handed alpha
Helix 25	AC7	D	108	116	Right-handed alpha
Helix 26	AC8	D	118	125	Right-handed alpha
Helix 27	AC9	D	130	139	Right-handed alpha
Helix 28	AD1	D	160	162	Right-handed 310
Helix 29	AD2	D	169	181	Right-handed alpha
Helix 30	AD3	E	18	34	Right-handed alpha
Helix 31	AD4	E	39	44	Right-handed alpha
Helix 32	AD5	E	58	79	Right-handed alpha
Helix 33	AD6	E	82	96	Right-handed alpha
Helix 34	AD7	E	134	145	Right-handed alpha
Helix 35	AD8	E	149	155	Right-handed alpha
Helix 36	AD9	F	14	22	Right-handed alpha
Helix 37	AE1	F	26	37	Right-handed alpha
Helix 38	AE2	F	50	53	Right-handed 310
Helix 39	AE3	F	54	62	Right-handed alpha
Helix 40	AE4	F	108	116	Right-handed alpha
Helix 41	AE5	F	118	125	Right-handed alpha
Helix 42	AE6	F	130	139	Right-handed alpha
Helix 43	AE7	F	160	162	Right-handed 310
Helix 44	AE8	F	169	181	Right-handed alpha
Helix 45	AE9	G	18	34	Right-handed alpha
Helix 46	AF1	G	37	49	Right-handed alpha
Helix 47	AF2	G	58	79	Right-handed alpha
Helix 48	AF3	G	82	96	Right-handed alpha
Helix 49	AF4	G	133	143	Right-handed alpha
Helix 50	AF5	H	2	7	Right-handed 310
Helix 51	AF6	H	14	22	Right-handed alpha
Helix 52	AF7	H	26	37	Right-handed alpha
Helix 53	AF8	H	50	62	Right-handed alpha
Helix 54	AF9	H	108	116	Right-handed alpha
Helix 55	AG1	H	118	125	Right-handed alpha
Helix 56	AG2	H	130	139	Right-handed alpha
Helix 57	AG3	H	160	162	Right-handed 310
Helix 58	AG4	H	169	181	Right-handed alpha

There are 12 sheets in PDB entry 11VK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	E	160	163	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	E	7	10	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	46	48	anti-parallel
Strand 4	B	68	74	anti-parallel
Strand 5	B	79	84	anti-parallel
Strand 6	B	90	96	anti-parallel
Strand 7	B	101	106	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	149	first strand
Strand 2	B	164	168	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	G	159	163	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	G	7	10	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	11	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	46	48	anti-parallel
Strand 4	D	68	74	anti-parallel
Strand 5	D	79	84	anti-parallel
Strand 6	D	90	96	anti-parallel
Strand 7	D	101	106	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	149	first strand
Strand 2	D	164	168	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	11	first strand
Strand 2	F	38	41	anti-parallel
Strand 3	F	46	48	anti-parallel
Strand 4	F	68	74	anti-parallel
Strand 5	F	79	84	anti-parallel
Strand 6	F	90	96	anti-parallel
Strand 7	F	101	106	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	149	first strand
Strand 2	F	164	168	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	11	first strand
Strand 2	H	38	41	anti-parallel
Strand 3	H	46	48	anti-parallel
Strand 4	H	68	74	anti-parallel
Strand 5	H	79	84	anti-parallel
Strand 6	H	90	96	anti-parallel
Strand 7	H	101	106	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	149	first strand
Strand 2	H	164	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 11VK

Analysis of interatomic Contacts of Structural Units in PDB entry:
11VK