Analysis of interatomic Contacts of Structural Units in PDB entry:
11VM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11VM entry

There is 1 chain in PDB entry 11VM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 11VM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed 310
Helix 2
AA2
A
15 23Right-handed alpha
Helix 3
AA3
A
27 37Right-handed alpha
Helix 4
AA4
A
51 63Right-handed alpha
Helix 5
AA5
A
107 113Right-handed alpha
Helix 6
AA6
A
114 121Right-handed alpha
Helix 7
AA7
A
126 135Right-handed alpha
Helix 8
AA8
A
148 152Right-handed 310
Helix 9
AA9
A
156 158Right-handed 310
Helix 10
AB1
A
165 177Right-handed alpha
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There are 2 sheets in PDB entry 11VM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
47 49anti-parallel
Strand 4
A
70 75anti-parallel
Strand 5
A
79 84anti-parallel
Strand 6
A
87 92anti-parallel
Strand 7
A
97 103anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
160 164anti-parallel
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