Analysis of interatomic Contacts of Structural Units in PDB entry:
11VQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 11VQ entry

There are 3 chains in PDB entry 11VQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4PRO 1075
B
 C 19 U 39
C
 A 1 A 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 11VQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
35 67Right-handed alpha
Helix 3
AA3
A
73 86Right-handed alpha
Helix 4
AA4
A
88 111Right-handed alpha
Helix 5
AA5
A
118 131Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
140 147Right-handed alpha
Helix 8
AA8
A
152 161Right-handed alpha
Helix 9
AA9
A
165 168Right-handed 310
Helix 10
AB1
A
169 178Right-handed alpha
Helix 11
AB2
A
188 195Right-handed alpha
Helix 12
AB3
A
196 215Right-handed alpha
Helix 13
AB4
A
217 230Right-handed alpha
Helix 14
AB5
A
236 241Right-handed alpha
Helix 15
AB6
A
242 249Right-handed 310
Helix 16
AB7
A
251 263Right-handed alpha
Helix 17
AB8
A
276 286Right-handed alpha
Helix 18
AB9
A
289 297Right-handed alpha
Helix 19
AC1
A
325 337Right-handed alpha
Helix 20
AC2
A
338 343Right-handed alpha
Helix 21
AC3
A
344 355Right-handed alpha
Helix 22
AC4
A
356 358Right-handed 310
Helix 23
AC5
A
370 379Right-handed alpha
Helix 24
AC6
A
382 391Right-handed alpha
Helix 25
AC7
A
392 394Right-handed 310
Helix 26
AC8
A
409 414Right-handed alpha
Helix 27
AC9
A
420 428Right-handed alpha
Helix 28
AD1
A
428 452Right-handed alpha
Helix 29
AD2
A
460 482Right-handed alpha
Helix 30
AD3
A
493 522Right-handed alpha
Helix 31
AD4
A
545 547Right-handed 310
Helix 32
AD5
A
548 553Right-handed alpha
Helix 33
AD6
A
570 574Right-handed 310
Helix 34
AD7
A
603 609Right-handed alpha
Helix 35
AD8
A
612 620Right-handed alpha
Helix 36
AD9
A
639 647Right-handed alpha
Helix 37
AE1
A
656 664Right-handed alpha
Helix 38
AE2
A
665 685Right-handed alpha
Helix 39
AE3
A
694 698Right-handed 310
Helix 40
AE4
A
700 704Right-handed 310
Helix 41
AE5
A
706 715Right-handed alpha
Helix 42
AE6
A
728 737Right-handed alpha
Helix 43
AE7
A
759 769Right-handed alpha
Helix 44
AE8
A
770 776Right-handed alpha
Helix 45
AE9
A
887 899Right-handed alpha
Helix 46
AF1
A
936 941Right-handed alpha
Helix 47
AF2
A
941 957Right-handed alpha
Helix 48
AF3
A
965 987Right-handed alpha
Helix 49
AF4
A
1011 1024Right-handed alpha
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There are 6 sheets in PDB entry 11VQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
554 559anti-parallel
Strand 8
A
589 597anti-parallel
Strand 9
A
719 727anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
779 781anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
274 275anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
418 419anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 931first strand
Strand 2
A
916 920anti-parallel
Strand 3
A
904 908anti-parallel
Strand 4
A
989 994parallel
Strand 5
A
1062 1066parallel
Strand 6
A
1058 1059anti-parallel
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